RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA577580", tax_clade = "SAR86 cluster" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pseudomonadati · 1 ✖

tax_clade 1

  • SAR86 cluster · 1 ✖

bioproject 1

  • PRJNA577580 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8217228 8217228 PRJNA577580_P_NODE_3807_length_461_cov_3.082474_g3729_i0 PRJNA577580 3807 461 3.082474 14.21020514 SAR86 cluster bacterium 2030880 Bacteria Bacteria 196 3.84e-61   NR URQ67789.1 2030880 g3729 i0 63 3.28633405639913 127 47 82.6 0 459 79 35 161 URQ67789.1 glutathione peroxidase [SAR86 cluster bacterium] diamond 1515 196 1 Bacteria SAR86 cluster Pseudomonadati Pseudomonadota Gammaproteobacteria       SAR86 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;