RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA577580", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27743336 27743336 PRJNA577580_P_NODE_7044_length_339_cov_1.172932_g6966_i0 PRJNA577580 7044 339 1.172932 3.97623948 Lentisphaerota bacterium 1932692 Bacteria Bacteria 76.3 1.42e-13   NR NLB70123.1 1932692 g6966 i0 36 0.982300884955752 111 61 89.4 4 32 334 249 359 NLB70123.1 hypothetical protein [Lentisphaerota bacterium] diamond 333 76.3 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29335244 29335244 PRJNA577580_P_NODE_1369_length_773_cov_4.737143_g1300_i0 PRJNA577580 1369 773 4.737143 36.61811539 Pseudomonadati 3379134 Bacteria Bacteria 153 2.03e-41   NR HHX97651.1 1932692 g1300 i0 38.8 7.75420439844761 250 139 96.2 6 767 24 30 267 HHX97651.1 pyrroline-5-carboxylate reductase [Lentisphaerota bacterium] diamond 5994 154 0.993506493506494 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
29826824 29826824 PRJNA577580_P_NODE_5931_length_368_cov_2.928814_g5853_i0 PRJNA577580 5931 368 2.928814 10.77803552 Victivallales bacterium 2212475 Bacteria Bacteria 82.8 1.21e-15   NR MCF7790359.1 2212475 g5853 i0 42.5 0.864130434782609 106 61 86.4 0 38 355 313 418 MCF7790359.1 hypothetical protein [Victivallales bacterium] diamond 318 82.8 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;