RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA577580", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA577580 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6942176 6942176 PRJNA577580_P_NODE_1306_length_789_cov_6.688547_g1237_i0 PRJNA577580 1306 789 6.688547 52.77263583 Chlorobiota bacterium 2268192 Bacteria Bacteria 115 3.94e-25   NR NPA34048.1 2268192 g1237 i0 44.3 0.498098859315589 131 63 47.5 4 313 687 486 612 NPA34048.1 C-type lectin domain-containing protein [Chlorobiota bacterium] diamond 393 115 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
9492454 9492454 PRJNA577580_P_NODE_2848_length_533_cov_1.800000_g2770_i0 PRJNA577580 2848 533 1.8 9.594 Prosthecochloris sp. CIB 2401 1868325 Bacteria Bacteria 241 1.04e-58   NTclustered gi|1044515116|gb|CP016432.1| 1868325 g2770 i0 79.032 297.435272045028 372 63 68 13 170 530 103656 104023 Prosthecochloris sp. CIB 2401 chromosome, complete genome blastn 158533 241 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. CIB 2401
27535567 27535567 PRJNA577580_P_NODE_13803_length_252_cov_0.871508_g13725_i0 PRJNA577580 13803 252 0.871508 2.19620016 Bacteria 2 Bacteria Bacteria 84 6.37e-17   NR RFM25205.1 1868324 g13725 i0 50.6 4.71428571428571 79 39 94 0 1 237 130 208 RFM25205.1 MAG: L-asparaginase 1 [Candidatus Thermochlorobacter aerophilum] diamond 1188 84 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Candidatus Thermochlorobacteriaceae Candidatus Thermochlorobacter Candidatus Thermochlorobacter aerophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;