RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA577580", tax_clade = "FCB group" and tax_phylum = "Candidatus Hydrogenedentota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Hydrogenedentota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA577580 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12617156 12617156 PRJNA577580_P_NODE_1610_length_715_cov_1.271028_g1536_i0 PRJNA577580 1610 715 1.271028 9.0878502 Pseudomonadati 3379134 Bacteria Bacteria 288 2.73e-94   NR HRI88968.1 2030809 g1536 i0 58.2 5.91188811188811 232 93 97.3 2 713 18 66 293 HRI88968.1 oxygen-dependent coproporphyrinogen oxidase [Candidatus Hydrogenedentota bacterium] diamond 4227 289 0.996539792387543 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
13317978 13317978 PRJNA577580_P_NODE_1171_length_827_cov_4.258621_g1105_i0 PRJNA577580 1171 827 4.258621 35.21879567 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 407 3.6e-140   NR MCC6695645.1 2030809 g1105 i0 72.4 10.8464328899637 272 74 98.3 1 1 813 43 314 MCC6695645.1 thioredoxin-disulfide reductase [Candidatus Hydrogenedentota bacterium] diamond 8970 407 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium
31501967 31501967 PRJNA577580_P_NODE_15716_length_244_cov_1.824561_g15638_i0 PRJNA577580 15716 244 1.824561 4.45192884 Candidatus Hydrogenedentota bacterium 2030809 Bacteria Bacteria 89 4.45e-20   NR MBX3180743.1 2030809 g15638 i0 58.9 4.62295081967213 73 28 87.3 2 1 213 48 120 MBX3180743.1 superoxide dismutase family protein [Candidatus Hydrogenedentota bacterium] diamond 1128 89 1 Bacteria FCB group Pseudomonadati Candidatus Hydrogenedentota         Candidatus Hydrogenedentota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;