RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA577580", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA577580 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14592899 14592899 PRJNA577580_P_NODE_3552_length_477_cov_5.970297_g3474_i0 PRJNA577580 3552 477 5.970297 28.47831669 Paraflabellula hoguae 136459 Tubulinea other_Eukaryota 289 3.25e-73   NTclustered gi|145386791|gb|EF216916.1| 136459 g3474 i0 79.05 52.5953878406709 463 66 97 22 1 462 1087 1519 Paraflabellula hoguae 28S large subunit ribosomal RNA gene, partial sequence blastn 25088 289 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Paraflabellula Paraflabellula hoguae
23516425 23516425 PRJNA577580_P_NODE_14319_length_250_cov_0.881356_g14241_i0 PRJNA577580 14319 250 0.881356 2.20339 Nolandella sp. LAK-2012 1260117 Tubulinea other_Eukaryota 145 3.63e-30   NTclustered gi|421976359|gb|JQ519496.1| 1260117 g14241 i0 77.686 2.808 242 50 96 4 11 250 506 745 Nolandella sp. LAK-2012 elongation factor 2 alpha gene, partial cds blastn 702 145 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. LAK-2012
32369648 32369648 PRJNA577580_P_NODE_4019_length_449_cov_2.816489_g3941_i0 PRJNA577580 4019 449 2.816489 12.64603561 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 204 8.96e-64   NR ABD46563.1 5778 g3941 i0 66.4 2.98663697104677 149 48 98.9 2 445 2 46 193 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 1341 204 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;