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contig_metadata

19 rows where bioproject = "PRJNA577226" and tax_clade = "core chlorophytes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 19 ✖

bioproject 1

  • PRJNA577226 · 19 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1836828 1836828 PRJNA577226_S_NODE_21802_length_270_cov_4.497854_g20863_i0 PRJNA577226 21802 270 4.497854 12.1442058 Desmodesmus armatus 375941 Plants Plants 403 5.93e-108   NTclustered gi|2575200469|gb|OR533320.1| 375941 g20863 i0 93.727 64.1740740740741 271 14 100 2 1 270 5428 5696 Desmodesmus armatus culture FBCC:A0245 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 17327 403 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus armatus
1836962 1836962 PRJNA577226_S_NODE_26062_length_245_cov_4.187500_g25123_i0 PRJNA577226 26062 245 4.1875 10.259375 Koliella sp. HS-2024a 3231931 Plants Plants 398 2.47e-106   NTclustered gi|2754686484|gb|PP990793.1| 3231931 g25123 i0 95.918 114.261224489796 245 10 100 0 1 245 19811 20055 Koliella sp. HS-2024a strain FACHB-3607 chloroplast, complete genome blastn 27994 398 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Koliellaceae Koliella Koliella sp. HS-2024a
2412750 2412750 PRJNA577226_S_NODE_37702_length_202_cov_4.406061_g36763_i0 PRJNA577226 37702 202 4.406061 8.90024322 Desmodesmus 91202 Plants Plants 363 7.149999999999999e-96   NTclustered gi|2575200469|gb|OR533320.1| 375941 g36763 i0 99.01 108.173267326733 202 2 100 0 1 202 4736 4937 Desmodesmus armatus culture FBCC:A0245 small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and large subunit ribosomal RNA gene, complete sequence blastn 21851 363 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Desmodesmus Desmodesmus armatus
3688561 3688561 PRJNA577226_S_NODE_19083_length_291_cov_5.586614_g18144_i0 PRJNA577226 19083 291 5.586614 16.25704674 Chlorophyta 3041 Plants Plants 527 3.67e-145   NTclustered gi|359385188|emb|FR865599.1| 3054 g18144 i0 99.313 99.9965635738832 291 2 100 0 1 291 1188 898 Chlamydomonas moewusii genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 11/61A blastn 29099 532 0.990601503759398 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas moewusii
6240883 6240883 PRJNA577226_S_NODE_33125_length_216_cov_4.726257_g32186_i0 PRJNA577226 33125 216 4.726257 10.20871512 Scenedesmaceae 3086 Plants Plants 394 2.75e-105   NTclustered gi|1669402954|gb|MK975486.1| 1169099 g32186 i0 99.537 99.7731481481482 216 1 100 0 1 216 1031 1246 Coelastrella striolata strain SAG 16.95 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 21551 394 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrella Coelastrella striolata
6241068 6241068 PRJNA577226_S_NODE_48805_length_178_cov_6.361702_g47866_i0 PRJNA577226 48805 178 6.361702 11.32382956 Eukaryota 2759 Plants Plants 318 1.34e-82   NTclustered gi|1898545223|gb|MT951391.1| 3078 g47866 i0 98.876 100 178 2 100 0 1 178 926 1103 Auxenochlorella pyrenoidosa strain Ozcimen001 small subunit ribosomal RNA gene, partial sequence blastn 17800 318 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
7515362 7515362 PRJNA577226_S_NODE_51166_length_174_cov_7.306569_g50227_i0 PRJNA577226 51166 174 7.306569 12.71343006 Watanabeaceae 2981775 Plants Plants 294 2.1999999999999998e-75   NTclustered gi|1169296931|gb|KY364701.1| 63676 g50227 i0 97.126 100.086206896552 174 5 100 0 1 174 3933 4106 Chloroidium ellipsoideum 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 17415 294 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium ellipsoideum
12040363 12040363 PRJNA577226_S_NODE_16650_length_314_cov_3.072202_g15711_i0 PRJNA577226 16650 314 3.072202 9.64671428 Nannochloris sp. 'desiccata' 1650286 Plants Plants 496 1.1299999999999999e-135   NTclustered gi|2175794152|gb|OK569791.1| 1650286 g15711 i0 95.498 124.570063694268 311 12 99 2 5 314 55148 54839 Chlorella desiccata (nom. nud.) chloroplast, complete genome blastn 39115 496 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
13315931 13315931 PRJNA577226_S_NODE_40571_length_195_cov_1.962025_g39632_i0 PRJNA577226 40571 195 1.962025 3.82594875 Coelastrella saipanensis 152631 Plants Plants 359 8.87e-95   NTclustered gi|1642520538|ref|NC_042181.1| 152631 g39632 i0 100 41.6205128205128 194 0 99 0 2 195 114930 114737 Coelastrella saipanensis chloroplast, complete genome blastn 8116 359 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Coelastrella Coelastrella saipanensis
13891653 13891653 PRJNA577226_S_NODE_5931_length_567_cov_4.160377_g5011_i0 PRJNA577226 5931 567 4.160377 23.58933759 Tetradesmus 91192 Plants Plants 821 0   NTclustered gi|2576955160|gb|OR551481.1| 113531 g5011 i0 92.794 100.359788359788 569 37 100 4 1 567 4252 3686 Tetradesmus distendus culture FBCC:A1020 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 56904 821 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Tetradesmus Tetradesmus distendus
17715304 17715304 PRJNA577226_S_NODE_40834_length_194_cov_7.847134_g39895_i0 PRJNA577226 40834 194 7.847134 15.22343996 root 1 Root_unresolved Root_unresolved 270 4.2499999999999985e-68   NTclustered gi|760450178|ref|XM_011403856.1| 3075 g39895 i0 91.753 99.9432989690722 194 16 100 0 1 194 85 278 Auxenochlorella protothecoides Putative uncharacterized protein ART2 partial mRNA blastn 19389 270 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
18988890 18988890 PRJNA577226_S_NODE_53055_length_171_cov_5.977612_g52116_i0 PRJNA577226 53055 171 5.977612 10.22171652 Chlorophyta 3041 Plants Plants 300 4.63e-77   NTclustered gi|359385302|emb|FR865718.1| 1034620 g52116 i0 98.246 99.9298245614035 171 3 100 0 1 171 1433 1603 Scenedesmus parvus genomic DNA containing 18S rRNA gene, ITS1, 5.8S rRNA gene, ITS2, 28S rRNA gene, culture collection CCAP 276/32 blastn 17088 300 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Scenedesmaceae Verrucodesmus Verrucodesmus parvus
19688776 19688776 PRJNA577226_S_NODE_56536_length_166_cov_6.604651_g55597_i0 PRJNA577226 56536 166 6.604651 10.96372066 Picochlorum sp. 2812594 Plants Plants 296 5.82e-76   NTclustered gi|2632235342|gb|OR922724.1| 2812594 g55597 i0 98.795 100.301204819277 166 2 100 0 1 166 3462 3297 Picochlorum sp. strain AGSB0210 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16650 296 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp.
20964687 20964687 PRJNA577226_S_NODE_6197_length_552_cov_16.749515_g5274_i0 PRJNA577226 6197 552 16.749515 92.4573228 Nannochloris sp. 'desiccata' 1650286 Plants Plants 769 0   NTclustered gi|2175794152|gb|OK569791.1| 1650286 g5274 i0 91.848 123.309782608696 552 43 100 2 1 552 56328 55779 Chlorella desiccata (nom. nud.) chloroplast, complete genome blastn 68067 769 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
22238136 22238136 PRJNA577226_S_NODE_10198_length_411_cov_8.221925_g9262_i0 PRJNA577226 10198 411 8.221925 33.79211175 Micractinium reisseri 532145 Plants Plants 601 3.1299999999999992e-167   NTclustered gi|297501471|dbj|AB506071.1| 532145 g9262 i0 93.154 48.1995133819951 409 28 99 0 1 409 6046 6454 Micractinium reisseri genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, partial and complete sequence, clone: 2 blastn 19810 601 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium reisseri
22814399 22814399 PRJNA577226_S_NODE_24038_length_256_cov_23.141553_g23099_i0 PRJNA577226 24038 256 23.141553 59.24237568 Marvania 97104 Plants Plants 409 1.2e-109   NTclustered gi|723457130|ref|NC_025549.1| 97105 g23099 i0 96.047 171.04296875 253 6 98 2 5 256 4607 4856 Marvania geminata culture-collection SAG:12.88 chloroplast, complete genome blastn 43787 409 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Marvania Marvania geminata
23515017 23515017 PRJNA577226_S_NODE_67079_length_154_cov_2.324786_g66140_i0 PRJNA577226 67079 154 2.324786 3.58017044 Stichococcus bacillaris 37433 Plants Plants 100 4.45e-17   NTclustered gi|371782093|emb|HE610125.1| 37433 g66140 i0 77.914 1.70779220779221 163 22 97 8 5 154 7298 7137 Stichococcus bacillaris 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain SAG 379-2 blastn 263 100 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Prasiolales Stichococcaceae Stichococcus Stichococcus bacillaris
24088998 24088998 PRJNA577226_S_NODE_10119_length_413_cov_20.002660_g9183_i0 PRJNA577226 10119 413 20.00266 82.6109858 Chlorellaceae 35461 Plants Plants 505 2.54e-138   NTclustered gi|723457130|ref|NC_025549.1| 97105 g9183 i0 91.803 181.753026634383 366 25 88 3 49 413 4495 4856 Marvania geminata culture-collection SAG:12.88 chloroplast, complete genome blastn 75064 505 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Marvania Marvania geminata
28595689 28595689 PRJNA577226_S_NODE_56147_length_167_cov_1.500000_g55208_i0 PRJNA577226 56147 167 1.5 2.505 Micractinium sp. CCAP 211/92 554058 Plants Plants 41.6 0.0348   NR KAL4447325.1 554058 g55208 i0 54.8 0.754491017964072 42 13 70.1 2 18 134 110 148 KAL4447325.1 hypothetical protein ABPG77_007358 [Micractinium sp. CCAP 211/92] diamond 126 41.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Micractinium Micractinium sp. CCAP 211/92

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;