RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA577226", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 2 ✖

bioproject 1

  • PRJNA577226 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27174228 27174228 PRJNA577226_S_NODE_52562_length_172_cov_2.014815_g51623_i0 PRJNA577226 52562 172 2.014815 3.4654818 Meloidogyne enterolobii 390850 Nematoda Nematoda 57 4.69e-8   NR CAD2190218.1 390850 g51623 i0 65.8 1.37790697674419 38 13 66.3 0 170 57 145 182 CAD2190218.1 unnamed protein product [Meloidogyne enterolobii] diamond 237 57 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne enterolobii
31862988 31862988 PRJNA577226_S_NODE_58157_length_164_cov_2.094488_g57218_i0 PRJNA577226 58157 164 2.094488 3.43496032 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 74.7 1.07e-14   NR NP_502077.1 6239 g57218 i0 100 450.365853658537 38 0 69.5 0 1 114 173 210 NP_502077.1 Small ribosomal subunit protein uS7 [Caenorhabditis elegans] diamond 73860 74.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;