RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA577226" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA577226 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9490620 9490620 PRJNA577226_S_NODE_52128_length_173_cov_1.433824_g51189_i0 PRJNA577226 52128 173 1.433824 2.48051552 uncultured Methanobacterium sp. 176306 Archaea Archaea 315 1.68e-81   NTclustered gi|1243455761|gb|MF972900.1| 176306 g51189 i0 99.422 118.341040462428 173 1 100 0 1 173 1441 1269 Uncultured Methanobacterium sp. clone 1 16S ribosomal RNA gene, partial sequence blastn 20473 315 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium uncultured Methanobacterium sp.
15864691 15864691 PRJNA577226_S_NODE_44253_length_187_cov_1.560000_g43314_i0 PRJNA577226 44253 187 1.56 2.9172 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 329 6.6e-86   NTclustered gi|2874253858|emb|OY969914.1| 176233 g43314 i0 98.396 129.51871657754 187 3 100 0 1 187 2030134 2030320 MAG: uncultured Methanobacteriaceae archaeon isolate MFD02416.bin.1.248 genome assembly, chromosome: 1 blastn 24220 329 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
26871987 26871987 PRJNA577226_S_NODE_48161_length_180_cov_1.160839_g47222_i0 PRJNA577226 48161 180 1.160839 2.0895102 root 1 Root_unresolved Root_unresolved 102 1.73e-26   NR MDG3548624.1 2162 g47222 i0 96.3 1.8 54 2 90 0 180 19 44 97 MDG3548624.1 tripartite tricarboxylate transporter substrate-binding protein [Methanobacterium formicicum] diamond 324 103 0.990291262135922 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;