RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

20 rows where bioproject = "PRJNA577226" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 20 ✖

bioproject 1

  • PRJNA577226 · 20 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
562117 562117 PRJNA577226_S_NODE_45821_length_184_cov_1.496599_g44882_i0 PRJNA577226 45821 184 1.496599 2.75374216 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 335 1.3899999999999996e-87   NTclustered gi|292559443|ref|NC_013986.1| 5778 g44882 i0 99.457 25.75 184 1 100 0 1 184 25844 26027 Hartmannella vermiformis mitochondrion, complete genome blastn 4738 335 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3112762 3112762 PRJNA577226_S_NODE_39783_length_197_cov_2.018750_g38844_i0 PRJNA577226 39783 197 2.01875 3.9769375 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 348 1.94e-91   NTclustered gi|300078496|gb|GU001158.1| 5778 g38844 i0 98.477 66.1167512690355 197 3 100 0 1 197 2539 2343 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13025 348 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3688465 3688465 PRJNA577226_S_NODE_12303_length_370_cov_16.810811_g11364_i0 PRJNA577226 12303 370 16.810811 62.2000007 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 577 4.6899999999999996e-160   NTclustered gi|300078496|gb|GU001158.1| 5778 g11364 i0 97.898 51.7918918918919 333 7 90 0 1 333 1250 918 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 19163 577 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4389513 4389513 PRJNA577226_S_NODE_44504_length_186_cov_12.302013_g43565_i0 PRJNA577226 44504 186 12.302013 22.88174418 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 311 2.38e-80   NTclustered gi|909719645|gb|KT185625.1| 5778 g43565 i0 96.774 1.72043010752688 186 6 100 0 1 186 7096 6911 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 320 311 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
4389874 4389874 PRJNA577226_S_NODE_58804_length_163_cov_7.174603_g57865_i0 PRJNA577226 58804 163 7.174603 11.69460289 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 302 1.22e-77   NTclustered gi|300078496|gb|GU001158.1| 5778 g57865 i0 100 95.9631901840491 163 0 100 0 1 163 3865 3703 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15642 302 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6240842 6240842 PRJNA577226_S_NODE_29145_length_231_cov_10.500000_g28206_i0 PRJNA577226 29145 231 10.5 24.255 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 427 2.9399999999999998e-115   NTclustered gi|399764177|gb|JQ271688.1| 5778 g28206 i0 100 100 231 0 100 0 1 231 382 152 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 23100 427 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10765723 10765723 PRJNA577226_S_NODE_23869_length_257_cov_19.404545_g22930_i0 PRJNA577226 23869 257 19.404545 49.86968065 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 475 1.1699999999999999e-129   NTclustered gi|909719645|gb|KT185625.1| 5778 g22930 i0 100 3.33852140077821 257 0 100 0 1 257 6065 6321 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 858 475 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
12616650 12616650 PRJNA577226_S_NODE_6050_length_560_cov_13.472275_g5130_i0 PRJNA577226 6050 560 13.472275 75.44474 Vermamoeba 1260114 Tubulinea other_Eukaryota 335 4.89e-87   NTclustered gi|909719645|gb|KT185625.1| 5778 g5130 i0 96.098 777.185714285714 205 8 37 0 186 390 4735 4939 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 435224 335 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13315333 13315333 PRJNA577226_S_NODE_19311_length_289_cov_9.873016_g18372_i0 PRJNA577226 19311 289 9.873016 28.53301624 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 529 1.01e-145   NTclustered gi|300078496|gb|GU001158.1| 5778 g18372 i0 99.654 5.56747404844291 289 1 100 0 1 289 1620 1332 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1609 529 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14590637 14590637 PRJNA577226_S_NODE_36432_length_206_cov_1.928994_g35493_i0 PRJNA577226 36432 206 1.928994 3.97372764 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 230 7.749999999999999e-56   NTclustered gi|292559443|ref|NC_013986.1| 5778 g35493 i0 96.403 45.0728155339806 139 5 67 0 1 139 25996 26134 Hartmannella vermiformis mitochondrion, complete genome blastn 9285 230 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
15864391 15864391 PRJNA577226_S_NODE_32973_length_217_cov_1.644444_g32034_i0 PRJNA577226 32973 217 1.644444 3.56844348 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 396 7.689999999999997e-106   NTclustered gi|292559443|ref|NC_013986.1| 5778 g32034 i0 99.539 3.7741935483871 217 1 100 0 1 217 26543 26327 Hartmannella vermiformis mitochondrion, complete genome blastn 819 396 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17139817 17139817 PRJNA577226_S_NODE_50534_length_175_cov_11.413043_g49595_i0 PRJNA577226 50534 175 11.413043 19.97282525 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 322 1.02e-83   NTclustered gi|300078496|gb|GU001158.1| 5778 g49595 i0 100 102.588571428571 174 0 99 0 1 174 2254 2427 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17953 322 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
17140123 17140123 PRJNA577226_S_NODE_62094_length_160_cov_0.951220_g61155_i0 PRJNA577226 62094 160 0.95122 1.521952 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 287 3.34e-73   NTclustered gi|292559443|ref|NC_013986.1| 5778 g61155 i0 99.367 1.9125 158 1 99 0 1 158 28129 28286 Hartmannella vermiformis mitochondrion, complete genome blastn 306 287 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
18988420 18988420 PRJNA577226_S_NODE_14395_length_340_cov_9.125413_g13456_i0 PRJNA577226 14395 340 9.125413 31.0264042 Tubulinea 555369 Tubulinea other_Eukaryota 628 1.1699999999999999e-175   NTclustered gi|891071998|gb|KT266863.1| 5778 g13456 i0 100 99.8058823529412 340 0 100 0 1 340 19 358 Vermamoeba vermiformis isolate TW EDP 1 18S ribosomal RNA gene, partial sequence blastn 33934 628 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19689247 19689247 PRJNA577226_S_NODE_9496_length_429_cov_12.459184_g8561_i0 PRJNA577226 9496 429 12.459184 53.44989936 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 782 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g8561 i0 99.534 76.0955710955711 429 2 100 0 1 429 2934 2506 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 32645 782 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20263874 20263874 PRJNA577226_S_NODE_40276_length_196_cov_1.635220_g39337_i0 PRJNA577226 40276 196 1.63522 3.2050312 root 1 Root_unresolved Root_unresolved 361 2.48e-95   NTclustered gi|292559443|ref|NC_013986.1| 5778 g39337 i0 100 27.0969387755102 195 0 99 0 2 196 19780 19586 Hartmannella vermiformis mitochondrion, complete genome blastn 5311 361 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22238563 22238563 PRJNA577226_S_NODE_24918_length_251_cov_7.649533_g23979_i0 PRJNA577226 24918 251 7.649533 19.20032783 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 464 2.47e-126   NTclustered gi|300078496|gb|GU001158.1| 5778 g23979 i0 100 60.8884462151394 251 0 100 0 1 251 4030 4280 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15283 464 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22814814 22814814 PRJNA577226_S_NODE_59618_length_162_cov_4.568000_g58679_i0 PRJNA577226 59618 162 4.568 7.40016 Vermamoeba 1260114 Tubulinea other_Eukaryota 294 2.03e-75   NTclustered gi|909719645|gb|KT185625.1| 5778 g58679 i0 99.383 8.26543209876543 162 1 100 0 1 162 4445 4284 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 1339 294 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24788435 24788435 PRJNA577226_S_NODE_54380_length_169_cov_19.424242_g53441_i0 PRJNA577226 54380 169 19.424242 32.82696898 Golemanskia viscidula 2898944 Tubulinea other_Eukaryota 265 1.66e-66   NTclustered gi|2156866376|gb|OL677473.1| 2898944 g53441 i0 94.706 100.278106508876 170 8 100 1 1 169 127 296 Difflugia viscidula voucher 204 small subunit ribosomal RNA gene, partial sequence blastn 16947 265 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Difflugiidae Golemanskia Golemanskia viscidula
25363420 25363420 PRJNA577226_S_NODE_12600_length_365_cov_11.530488_g11661_i0 PRJNA577226 12600 365 11.530488 42.0862812 Vermamoeba 1260114 Tubulinea other_Eukaryota 658 0   NTclustered gi|2777861736|gb|PQ072230.1| 5778 g11661 i0 99.18 100.279452054795 366 2 100 1 1 365 1195 1560 Vermamoeba vermiformis strain CCAP_1534_12_consensus_sequence small subunit ribosomal RNA gene, partial sequence blastn 36602 658 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;