RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

26 rows where bioproject = "PRJNA576995", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 26 ✖

tax_phylum 1

  • Myxococcota · 26 ✖

tax_kingdom 1

bioproject 1

  • PRJNA576995 · 26 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7514799 7514799 PRJNA576995_P_NODE_30006_length_278_cov_1.356098_g29414_i0 PRJNA576995 30006 278 1.356098 3.76995244 Myxococcales bacterium 2026763 Bacteria Bacteria 78.2 3.21e-15   NR MBU6161592.1 2026763 g29414 i0 49.3 1.65107913669065 69 35 74.5 0 272 66 58 126 MBU6161592.1 adenylate/guanylate cyclase domain-containing protein [Myxococcales bacterium] diamond 459 78.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
19687352 19687352 PRJNA576995_P_NODE_41976_length_243_cov_0.905882_g41384_i0 PRJNA576995 41976 243 0.905882 2.20129326 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 108 3.83e-29   NR MFN7699925.1 2026735 g41384 i0 98 0.62962962962963 51 1 63 0 241 89 25 75 MFN7699925.1 cold-shock protein [Deltaproteobacteria bacterium] diamond 153 108 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
20962747 20962747 PRJNA576995_P_NODE_20257_length_335_cov_1.931298_g19665_i0 PRJNA576995 20257 335 1.931298 6.4698483 Nannocystis punicea 2995304 Bacteria Bacteria 340 6.019999999999999e-89   NTclustered gi|2415023655|gb|CP114040.1| 2995304 g19665 i0 88.153 80.3283582089552 287 32 85 2 42 327 5377562 5377277 Nannocystis poenicansa strain FL3 chromosome, complete genome blastn 26910 340 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis punicea
20963132 20963132 PRJNA576995_P_NODE_617_length_1721_cov_5.493325_g498_i0 PRJNA576995 617 1721 5.493325 94.54012325 Pendulispora albinea 2741071 Bacteria Bacteria 2170 0   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g498 i0 89.544 145.398024404416 1731 156 99 19 3 1721 7190402 7192119 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 250230 2170 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
26826567 26826567 PRJNA576995_P_NODE_26221_length_298_cov_1.368889_g25629_i0 PRJNA576995 26221 298 1.368889 4.07928922 Myxococcota bacterium 2818507 Bacteria Bacteria 90.1 5.32e-19   NR MEO1228096.1 2818507 g25629 i0 43.8 3.16107382550336 105 49 97.7 3 291 1 112 214 MEO1228096.1 inositol 2-dehydrogenase [Myxococcota bacterium] diamond 942 90.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27174172 27174172 PRJNA576995_P_NODE_26122_length_299_cov_1.154867_g25530_i0 PRJNA576995 26122 299 1.154867 3.45305233 Myxococcaceae bacterium 2484252 Bacteria Bacteria 50.1 1.91e-4   NR MBX7098910.1 2484252 g25530 i0 57.4 1.83612040133779 47 20 47.2 0 59 199 537 583 MBX7098910.1 N-acetylmuramoyl-L-alanine amidase [Myxococcaceae bacterium] diamond 549 50.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
28229833 28229833 PRJNA576995_P_NODE_27506_length_291_cov_1.059633_g26914_i0 PRJNA576995 27506 291 1.059633 3.08353203 Bacteria 2 Bacteria Bacteria 67.4 1.42e-10   NR MCA9520103.1 2026763 g26914 i0 40.8 2.93814432989691 98 51 93.8 4 1 273 324 421 MCA9520103.1 hypothetical protein [Myxococcales bacterium] diamond 855 67.8 0.994100294985251 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28279526 28279526 PRJNA576995_P_NODE_32926_length_262_cov_0.878307_g32334_i0 PRJNA576995 32926 262 0.878307 2.30116434 Polyangiaceae bacterium 2268199 Bacteria Bacteria 50.4 8.95e-5   NR MEZ4299829.1 2268199 g32334 i0 39.5 2.83969465648855 81 41 91.6 2 245 6 29 102 MEZ4299829.1 DNRLRE domain-containing protein [Polyangiaceae bacterium] diamond 744 50.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28500843 28500843 PRJNA576995_P_NODE_39947_length_245_cov_0.895349_g39355_i0 PRJNA576995 39947 245 0.895349 2.19360505 Kofleriaceae bacterium 2212474 Bacteria Bacteria 57.8 1.78e-7   NR MEJ7602469.1 2212474 g39355 i0 55.1 3.75918367346939 49 21 60 1 193 47 128 175 MEJ7602469.1 MopE-related protein [Kofleriaceae bacterium] diamond 921 57.8 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
28658793 28658793 PRJNA576995_P_NODE_36167_length_250_cov_0.870056_g35575_i0 PRJNA576995 36167 250 0.870056 2.17514 Polyangiaceae bacterium 2268199 Bacteria Bacteria 108 2.11e-25   NR HEY1697811.1 2268199 g35575 i0 68.6 0.84 70 22 84 0 8 217 685 754 HEY1697811.1 cytochrome c3 family protein [Polyangiaceae bacterium] diamond 210 108 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28974506 28974506 PRJNA576995_P_NODE_39728_length_246_cov_0.890173_g39136_i0 PRJNA576995 39728 246 0.890173 2.18982558 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 45.1 0.00593   NR RLB53486.1 2026735 g39136 i0 35.9 1.42682926829268 78 31 73.2 3 224 45 421 497 RLB53486.1 MAG: hypothetical protein DRI34_13335, partial [Deltaproteobacteria bacterium] diamond 351 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29353385 29353385 PRJNA576995_P_NODE_41549_length_243_cov_0.905882_g40957_i0 PRJNA576995 41549 243 0.905882 2.20129326 Myxococcales bacterium 2026763 Bacteria Bacteria 81.3 5.15e-17   NR MBK6461155.1 2026763 g40957 i0 59.5 1.95061728395062 79 31 97.5 1 242 6 42 119 MBK6461155.1 RNA polymerase sigma factor [Myxococcales bacterium] diamond 474 81.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29447738 29447738 PRJNA576995_P_NODE_21150_length_329_cov_1.203125_g20558_i0 PRJNA576995 21150 329 1.203125 3.95828125 Hyalangium sp. 2028555 Bacteria Bacteria 102 1.14e-22   NR WP_324981267.1 2028555 g20558 i0 45.5 2.80851063829787 101 53 90.3 2 313 17 433 533 WP_324981267.1 lysyl oxidase family protein [Hyalangium sp.] diamond 924 102 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Hyalangium Hyalangium sp.
29447760 29447760 PRJNA576995_P_NODE_39710_length_246_cov_0.890173_g39118_i0 PRJNA576995 39710 246 0.890173 2.18982558 Myxococcales bacterium 2026763 Bacteria Bacteria 71.6 2.43e-12   NR MBK6462327.1 2026763 g39118 i0 43.2 0.98780487804878 81 45 97.6 1 244 5 67 147 MBK6462327.1 hypothetical protein [Myxococcales bacterium] diamond 243 71.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
29479235 29479235 PRJNA576995_P_NODE_23210_length_316_cov_1.267490_g22618_i0 PRJNA576995 23210 316 1.26749 4.0052684 Myxococcaceae bacterium 2484252 Bacteria Bacteria 45.1 0.00997   NR GMU58513.1 2484252 g22618 i0 40 2.45886075949367 65 37 59.8 1 245 57 82 146 GMU58513.1 MAG: hypothetical protein AMXMBFR34_02760 [Myxococcaceae bacterium] diamond 777 45.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
29763540 29763540 PRJNA576995_P_NODE_37531_length_248_cov_0.880000_g36939_i0 PRJNA576995 37531 248 0.88 2.1824 Polyangiaceae bacterium 2268199 Bacteria Bacteria 115 1.38e-30   NR HXX67380.1 2268199 g36939 i0 71.3 4.69354838709677 80 23 96.8 0 246 7 81 160 HXX67380.1 DoxX family protein [Polyangiaceae bacterium] diamond 1164 115 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
30521897 30521897 PRJNA576995_P_NODE_40993_length_244_cov_0.900585_g40401_i0 PRJNA576995 40993 244 0.900585 2.1974274 Pendulispora rubella 2741070 Bacteria Bacteria 55.5 1.2e-6   NR WP_394838810.1 2741070 g40401 i0 47.3 1.83196721311475 74 29 86.1 3 210 1 12 79 WP_394838810.1 hypothetical protein [Pendulispora rubella] diamond 447 55.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora rubella
30837883 30837883 PRJNA576995_P_NODE_42634_length_242_cov_0.911243_g42042_i0 PRJNA576995 42634 242 0.911243 2.20520806 Pendulispora albinea 2741071 Bacteria Bacteria 62.8 3.25e-9   NR WP_394826916.1 2741071 g42042 i0 44.7 0.942148760330578 76 42 94.2 0 15 242 350 425 WP_394826916.1 hypothetical protein [Pendulispora albinea] diamond 228 62.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
31121853 31121853 PRJNA576995_P_NODE_31795_length_268_cov_2.369231_g31203_i0 PRJNA576995 31795 268 2.369231 6.34953908 Paraliomyxa miuraensis 376150 Bacteria Bacteria 43.1 0.038   NR WP_266217561.1 376150 g31203 i0 37.3 0.66044776119403 59 33 66 1 267 91 652 706 WP_266217561.1 serine/threonine-protein kinase [Paraliomyxa miuraensis] diamond 177 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales   Paraliomyxa Paraliomyxa miuraensis
31343606 31343606 PRJNA576995_P_NODE_42716_length_242_cov_0.911243_g42124_i0 PRJNA576995 42716 242 0.911243 2.20520806 Archangium lipolyticum 2970465 Bacteria Bacteria 52 1.88e-5   NR WP_257462508.1 2970465 g42124 i0 44.1 2.50413223140496 59 29 70.7 2 46 216 171 227 WP_257462508.1 hypothetical protein [Archangium lipolyticum] diamond 606 52 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium lipolyticum
31470207 31470207 PRJNA576995_P_NODE_18336_length_351_cov_0.830935_g17744_i0 PRJNA576995 18336 351 0.830935 2.91658185 Labilithrix sp. 1971228 Bacteria Bacteria 48.5 0.00113   NR HVH45298.1 1971228 g17744 i0 46.7 0.641025641025641 75 37 64.1 2 305 81 288 359 HVH45298.1 hypothetical protein [Labilithrix sp.] diamond 225 48.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Labilitrichaceae Labilithrix Labilithrix sp.
31817908 31817908 PRJNA576995_P_NODE_35657_length_250_cov_0.870056_g35065_i0 PRJNA576995 35657 250 0.870056 2.17514 Myxococcales bacterium 2026763 Bacteria Bacteria 58.2 6.92e-8   NR MCA9634375.1 2026763 g35065 i0 65 0.48 40 14 48 0 121 2 78 117 MCA9634375.1 hypothetical protein [Myxococcales bacterium] diamond 120 58.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31912904 31912904 PRJNA576995_P_NODE_41717_length_243_cov_0.905882_g41125_i0 PRJNA576995 41717 243 0.905882 2.20129326 Myxococcota bacterium 2818507 Bacteria Bacteria 98.2 5.17e-22   NR MEM6991430.1 2818507 g41125 i0 68.2 2.44444444444444 66 21 81.5 0 198 1 5 70 MEM6991430.1 peroxidase family protein [Myxococcota bacterium] diamond 594 98.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32039505 32039505 PRJNA576995_P_NODE_31618_length_269_cov_1.964286_g31026_i0 PRJNA576995 31618 269 1.964286 5.28392934 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 91.7 3.19e-19   NR RME21121.1 2026735 g31026 i0 52.4 2.86617100371747 84 38 93.7 2 14 265 596 677 RME21121.1 MAG: hypothetical protein D6806_15245, partial [Deltaproteobacteria bacterium] diamond 771 91.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32608816 32608816 PRJNA576995_P_NODE_6800_length_612_cov_2.298701_g6216_i0 PRJNA576995 6800 612 2.298701 14.06805012 Kofleriaceae bacterium 2212474 Bacteria Bacteria 196 1.66e-58   NR HEY0254123.1 2212474 g6216 i0 51 7.99509803921569 202 83 99 4 2 607 116 301 HEY0254123.1 pirin family protein [Kofleriaceae bacterium] diamond 4893 196 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32640007 32640007 PRJNA576995_P_NODE_34940_length_251_cov_0.865169_g34348_i0 PRJNA576995 34940 251 0.865169 2.17157419 Myxococcota bacterium 2818507 Bacteria Bacteria 43.5 0.0213   NR MFI5321362.1 2818507 g34348 i0 46 1.19521912350598 50 25 59.8 1 201 52 99 146 MFI5321362.1 zf-HC2 domain-containing protein [Myxococcota bacterium] diamond 300 43.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;