RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA576995", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 7 ✖

tax_clade 1

bioproject 1

  • PRJNA576995 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26998045 26998045 PRJNA576995_P_NODE_31122_length_272_cov_1.402010_g30530_i0 PRJNA576995 31122 272 1.40201 3.8134672 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 139 2.26e-40   NR CEP03336.1 37360 g30530 i0 75.6 8.93382352941176 90 22 99.3 0 270 1 12 101 CEP03336.1 hypothetical protein PBRA_003096 [Plasmodiophora brassicae] diamond 2430 140 0.992857142857143 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27630385 27630385 PRJNA576995_P_NODE_36044_length_250_cov_0.870056_g35452_i0 PRJNA576995 36044 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 129 1.9299999999999998e-32   NR CEO97381.1 37360 g35452 i0 69.5 2.94 82 25 98.4 0 3 248 563 644 CEO97381.1 hypothetical protein PBRA_000726 [Plasmodiophora brassicae] diamond 735 130 0.992307692307692 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27869116 27869116 PRJNA576995_P_NODE_35745_length_250_cov_0.870056_g35153_i0 PRJNA576995 35745 250 0.870056 2.17514 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 77 3.48e-14   NR CEP02862.1 37360 g35153 i0 45.8 0.864 72 39 86.4 0 249 34 630 701 CEP02862.1 hypothetical protein PBRA_002829 [Plasmodiophora brassicae] diamond 216 77 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28879548 28879548 PRJNA576995_P_NODE_36168_length_250_cov_0.870056_g35576_i0 PRJNA576995 36168 250 0.870056 2.17514 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 72.4 2.5e-13   NR CEP03061.1 37360 g35576 i0 59.6 0.624 52 21 62.4 0 3 158 41 92 CEP03061.1 hypothetical protein PBRA_009279 [Plasmodiophora brassicae] diamond 156 72.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29195514 29195514 PRJNA576995_P_NODE_34949_length_251_cov_0.865169_g34357_i0 PRJNA576995 34949 251 0.865169 2.17157419 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 98.6 9.88e-23   NR CEP01565.1 37360 g34357 i0 54.2 0.99203187250996006 83 38 99.2 0 250 2 94 176 CEP01565.1 hypothetical protein PBRA_002170 [Plasmodiophora brassicae] diamond 249 98.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30995943 30995943 PRJNA576995_P_NODE_41954_length_243_cov_0.905882_g41362_i0 PRJNA576995 41954 243 0.905882 2.20129326 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 121 4.8e-33   NR SPQ93437.1 37360 g41362 i0 70 1.97530864197531 80 22 98.8 1 3 242 39 116 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 480 121 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31976103 31976103 PRJNA576995_P_NODE_41238_length_244_cov_0.900585_g40646_i0 PRJNA576995 41238 244 0.900585 2.1974274 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 69.3 1.65e-11   NR CEP01877.1 37360 g40646 i0 47.9 1.79508196721311 73 36 89.8 1 244 26 366 436 CEP01877.1 hypothetical protein PBRA_008820 [Plasmodiophora brassicae] diamond 438 69.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;