RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA576995", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 7 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 7 ✖

bioproject 1

  • PRJNA576995 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3111263 3111263 PRJNA576995_P_NODE_10283_length_481_cov_4.529412_g9691_i0 PRJNA576995 10283 481 4.529412 21.78647172 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 52.8 0.047   NTclustered gi|2874253690|emb|OY969416.1| 412056 g9691 i0 100 0.0582120582120582 28 0 6 0 39 66 4483466 4483493 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.1.157 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
9489265 9489265 PRJNA576995_P_NODE_43568_length_236_cov_2.742331_g42976_i0 PRJNA576995 43568 236 2.742331 6.47190116 Bacteria 2 Bacteria Bacteria 125 3.7e-31   NR MEW6156070.1 2026799 g42976 i0 73.1 4.95762711864407 78 21 99.2 0 236 3 892 969 MEW6156070.1 LamG domain-containing protein [Verrucomicrobiota bacterium] diamond 1170 126 0.992063492063492 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
18412722 18412722 PRJNA576995_P_NODE_33175_length_260_cov_1.278075_g32583_i0 PRJNA576995 33175 260 1.278075 3.322995 Lacunisphaera limnophila 1838286 Bacteria Bacteria 56.5 0.002   NTclustered gi|1070531674|gb|CP016094.1| 1838286 g32583 i0 97.059 0.130769230769231 34 0 13 1 193 226 760791 760823 Lacunisphaera limnophila strain IG16b, complete genome blastn 34 56.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Lacunisphaera Lacunisphaera limnophila
30314816 30314816 PRJNA576995_P_NODE_40372_length_245_cov_0.895349_g39780_i0 PRJNA576995 40372 245 0.895349 2.19360505 Pseudomonadati 3379134 Bacteria Bacteria 74.3 1.51e-14   NR MBL9159718.1 2026801 g39780 i0 50 3.28163265306122 70 35 85.7 0 240 31 68 137 MBL9159718.1 hypothetical protein [Verrucomicrobiales bacterium] diamond 804 74.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
30616579 30616579 PRJNA576995_P_NODE_19033_length_345_cov_1.029412_g18441_i0 PRJNA576995 19033 345 1.029412 3.5514714 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 47.8 0.00178   NR MBS0658504.1 2026799 g18441 i0 57.9 0.330434782608696 38 13 30.4 2 265 161 6 43 MBS0658504.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 114 47.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31059354 31059354 PRJNA576995_P_NODE_23235_length_316_cov_1.218107_g22643_i0 PRJNA576995 23235 316 1.218107 3.84921812 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.5 0.0478   NR MBS0619893.1 2026799 g22643 i0 28.9 0.920886075949367 97 57 92.1 3 295 5 464 548 MBS0619893.1 aconitate hydratase [Verrucomicrobiota bacterium] diamond 291 43.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31438334 31438334 PRJNA576995_P_NODE_3056_length_928_cov_1.540351_g2616_i0 PRJNA576995 3056 928 1.540351 14.29445728 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 55.1 9.18e-5   NR MDD8043828.1 2026799 g2616 i0 39.2 0.239224137931034 74 41 22.6 1 909 700 168 241 MDD8043828.1 glutamine amidotransferase [Verrucomicrobiota bacterium] diamond 222 55.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;