RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA576995", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Lloydiibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Lloydiibacteriota · 1 ✖

tax_clade 1

  • Bacteria candidate phyla · 1 ✖

bioproject 1

  • PRJNA576995 · 1 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23513161 23513161 PRJNA576995_P_NODE_35299_length_251_cov_0.865169_g34707_i0 PRJNA576995 35299 251 0.865169 2.17157419 Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_ 2750077 Bacteria Bacteria 55.5 1.28e-6   NR OGZ07902.1 1798660 g34707 i0 53.8 0.621513944223108 52 24 62.2 0 161 6 2 53 OGZ07902.1 MAG: hypothetical protein A3C13_04500 [Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_02_FULL_50_11] diamond 156 55.5 1 Bacteria Bacteria candidate phyla   Candidatus Lloydiibacteriota         Candidatus Lloydbacteria bacterium RIFCSPHIGHO2_02_FULL_50_11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;