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contig_metadata

13 rows where bioproject = "PRJNA575566" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA575566 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1835603 1835603 PRJNA575566_P_NODE_29662_length_201_cov_0.914286_g29465_i0 PRJNA575566 29662 201 0.914286 1.83771486 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 134 6.0700000000000006e-27   NTclustered gi|2795016998|ref|XM_067930413.1| 4785 g29465 i0 79 3.41791044776119 200 38 99 3 4 201 2319 2122 Phytophthora cinnamomi Aconitate hydratase, mitochondrial (IUM83_06227), partial mRNA blastn 687 134 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
3110945 3110945 PRJNA575566_P_NODE_20923_length_229_cov_1.142857_g20726_i0 PRJNA575566 20923 229 1.142857 2.61714253 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 128 3.3e-25   NTclustered gi|301107276|ref|XM_002902675.1| 403677 g20726 i0 77.578 10.6244541484716 223 42 96 7 5 223 772 990 Phytophthora infestans T30-4 adenosylhomocysteinase (PITG_10198), partial mRNA blastn 2433 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
5663706 5663706 PRJNA575566_P_NODE_15825_length_265_cov_1.254902_g15628_i0 PRJNA575566 15825 265 1.254902 3.3254903 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 169 2.31e-37   NTclustered gi|2795045505|ref|XM_067944074.1| 4785 g15628 i0 84 4.33962264150943 175 28 66 0 2 176 254 80 Phytophthora cinnamomi Ribosomal protein S2 (IUM83_19045), partial mRNA blastn 1150 169 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
15862769 15862769 PRJNA575566_P_NODE_24213_length_209_cov_0.864865_g24016_i0 PRJNA575566 24213 209 0.864865 1.80756785 Peronosclerospora sorghi 230839 SAR_Eukaryotes SAR_Eukaryotes 115 2.3e-21   NTclustered gi|2431515601|ref|NC_070108.1| 230839 g24016 i0 77.358 20.4545454545455 212 37 99 9 2 209 624 420 Peronosclerospora sorghi isolate P6 mitochondrion, complete genome blastn 4275 115 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronosclerospora Peronosclerospora sorghi
19686586 19686586 PRJNA575566_P_NODE_23276_length_214_cov_1.254902_g23079_i0 PRJNA575566 23276 214 1.254902 2.68549028 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 183 6.41e-42   NTclustered gi|669150047|ref|XM_008612364.1| 1156394 g23079 i0 82.609 5.69158878504673 207 36 97 0 8 214 7 213 Saprolegnia diclina VS20 hypothetical protein partial mRNA blastn 1218 183 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
22237238 22237238 PRJNA575566_P_NODE_3098_length_587_cov_2.131179_g2903_i0 PRJNA575566 3098 587 2.131179 12.51002073 Phytophthora citrophthora 4793 SAR_Eukaryotes SAR_Eukaryotes 462 2.26e-125   NTclustered gi|2314988661|ref|NC_067066.1| 4793 g2903 i0 81.326 82.8006814310051 573 103 97 4 10 580 8776 8206 Phytophthora citrophthora voucher CBS950_87 mitochondrion, complete genome blastn 48604 462 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora citrophthora
23512469 23512469 PRJNA575566_P_NODE_2619_length_640_cov_2.906736_g2429_i0 PRJNA575566 2619 640 2.906736 18.6031104 root 1 Root_unresolved Root_unresolved 111 8.43e-27   NR NP_037602.1 4787 g2429 i0 69.7 14.9390625 66 20 30.9 0 553 356 115 180 NP_037602.1 NADH dehydrogenase subunit 9 [Phytophthora infestans] diamond 9561 112 0.991071428571429 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
26604464 26604464 PRJNA575566_P_NODE_17701_length_250_cov_1.693122_g17504_i0 PRJNA575566 17701 250 1.693122 4.232805 Aphanomyces stellatus 120398 SAR_Eukaryotes SAR_Eukaryotes 62.8 3.17e-9   NR KAF0690082.1 120398 g17504 i0 43.2 0.888 74 42 88.8 0 29 250 19 92 KAF0690082.1 hypothetical protein As57867_018414 [Aphanomyces stellatus] diamond 222 62.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces stellatus
27819837 27819837 PRJNA575566_P_NODE_25964_length_207_cov_0.876712_g25767_i0 PRJNA575566 25964 207 0.876712 1.81479384 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 102 2.5599999999999998e-23   NR CAI5729819.1 86335 g25767 i0 77 9.01449275362319 61 14 88.4 0 184 2 450 510 CAI5729819.1 unnamed protein product [Peronospora destructor] diamond 1866 103 0.990291262135922 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
28229819 28229819 PRJNA575566_P_NODE_14546_length_276_cov_1.190698_g14349_i0 PRJNA575566 14546 276 1.190698 3.28632648 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 53.5 3.26e-6   NR YP_010394262.1 4786 g14349 i0 42.4 3.32608695652174 59 34 64.1 0 54 230 18 76 YP_010394262.1 ribosomal protein L5 [Phytophthora cryptogea] diamond 918 53.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cryptogea
29240521 29240521 PRJNA575566_P_NODE_29689_length_201_cov_0.914286_g29492_i0 PRJNA575566 29689 201 0.914286 1.83771486 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 43.1 0.0163   NR OQR89803.1 74557 g29492 i0 32 2.85074626865672 75 40 95.5 2 201 10 512 586 OQR89803.1 hypothetical protein THRCLA_09572 [Thraustotheca clavata] diamond 573 43.5 0.990804597701149 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
29745411 29745411 PRJNA575566_P_NODE_12670_length_295_cov_1.094017_g12473_i0 PRJNA575566 12670 295 1.094017 3.22735015 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.0383   NR KAF1332378.1 82926 g12473 i0 29.3 1.83050847457627 92 53 89.5 3 2 265 812 895 KAF1332378.1 Heat shock 70 kda protein, partial [Globisporangium splendens] diamond 540 43.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium splendens
31375245 31375245 PRJNA575566_P_NODE_24476_length_209_cov_0.864865_g24279_i0 PRJNA575566 24476 209 0.864865 1.80756785 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 63.2 1.51e-9   NR KAE9166247.1 53985 g24279 i0 44.4 3.61722488038277 63 35 90.4 0 11 199 763 825 KAE9166247.1 ABC transporter G family member 36 [Phytophthora fragariae] diamond 756 63.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;