RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA575566", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Bacteria · 11 ✖

tax_phylum 1

  • Myxococcota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA575566 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19686661 19686661 PRJNA575566_P_NODE_28156_length_203_cov_1.352113_g27959_i0 PRJNA575566 28156 203 1.352113 2.74478939 Sorangium cellulosum 56 Bacteria Bacteria 152 1.7e-32   NTclustered gi|161158851|emb|AM746676.1| 448385 g27959 i0 81.522 1.89655172413793 184 34 91 0 6 189 2828605 2828788 Sorangium cellulosum 'So ce 56' complete genome blastn 385 152 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
27851093 27851093 PRJNA575566_P_NODE_18904_length_242_cov_1.060773_g18707_i0 PRJNA575566 18904 242 1.060773 2.56707066 root 1 Root_unresolved Root_unresolved 81.3 9.83e-16   NR WP_181197707.1 215803 g18707 i0 41.3 3.94214876033058 80 47 99.2 0 2 241 261 340 WP_181197707.1 aldehyde dehydrogenase family protein [Enhygromyxa salina] diamond 954 81.6 0.996323529411765 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Enhygromyxa Enhygromyxa salina
27977471 27977471 PRJNA575566_P_NODE_26965_length_205_cov_0.888889_g26768_i0 PRJNA575566 26965 205 0.888889 1.82222245 Myxococcota 2818505 Bacteria Bacteria 53.9 2.6e-6   NR MCZ6806551.1 2026735 g26768 i0 41.9 2.73658536585366 62 36 90.7 0 192 7 191 252 MCZ6806551.1 long-chain fatty acid--CoA ligase [Deltaproteobacteria bacterium] diamond 561 54.3 0.992633517495396 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29146116 29146116 PRJNA575566_P_NODE_1369_length_876_cov_1.666258_g1209_i0 PRJNA575566 1369 876 1.666258 14.59642008 Bacteria 2 Bacteria Bacteria 75.9 3.03e-11   NR MBM4342325.1 2026735 g1209 i0 30.1 3.64383561643836 302 174 98.3 12 6 866 515 794 MBM4342325.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 3192 76.3 0.99475753604194 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
30142381 30142381 PRJNA575566_P_NODE_8552_length_358_cov_2.360269_g8355_i0 PRJNA575566 8552 358 2.360269 8.44976302 Myxococcota bacterium 2818507 Bacteria Bacteria 42.7 0.0123   NR MEZ4266528.1 2818507 g8355 i0 66.7 0.201117318435754 24 8 20.1 0 354 283 12 35 MEZ4266528.1 hypothetical protein [Myxococcota bacterium] diamond 72 42.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30743013 30743013 PRJNA575566_P_NODE_27954_length_204_cov_0.895105_g27757_i0 PRJNA575566 27954 204 0.895105 1.8260142 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 90.1 3.09e-19   NR MCB9557455.1 2026735 g27757 i0 67.1 1.02941176470588 70 20 98.5 1 202 2 290 359 MCB9557455.1 2-isopropylmalate synthase [Deltaproteobacteria bacterium] diamond 210 90.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31438293 31438293 PRJNA575566_P_NODE_28116_length_203_cov_1.802817_g27919_i0 PRJNA575566 28116 203 1.802817 3.65971851 Myxococcales bacterium 2026763 Bacteria Bacteria 107 1.93e-25   NR MSP61786.1 2026763 g27919 i0 77.6 0.990147783251232 67 15 99 0 3 203 109 175 MSP61786.1 argininosuccinate lyase [Myxococcales bacterium] diamond 201 107 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31515501 31515501 PRJNA575566_P_NODE_9036_length_348_cov_1.114983_g8839_i0 PRJNA575566 9036 348 1.114983 3.88014084 Pseudomonadati 3379134 Bacteria Bacteria 54.7 7.94e-6   NR MBM4352288.1 2026735 g8839 i0 43.1 2.20689655172414 65 33 55.2 3 346 155 205 266 MBM4352288.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 768 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31722961 31722961 PRJNA575566_P_NODE_12077_length_302_cov_1.062241_g11880_i0 PRJNA575566 12077 302 1.062241 3.20796782 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 43.9 0.0294   NR MBM4355836.1 2026735 g11880 i0 51.3 0.387417218543046 39 19 38.7 0 290 174 491 529 MBM4355836.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 117 43.9 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31786115 31786115 PRJNA575566_P_NODE_15917_length_264_cov_2.197044_g15720_i0 PRJNA575566 15917 264 2.197044 5.80019616 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.3 0.0143   NR MBI5607392.1 2026735 g15720 i0 41 0.693181818181818 61 29 61.4 1 231 70 474 534 MBI5607392.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 183 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31894768 31894768 PRJNA575566_P_NODE_9737_length_335_cov_1.167883_g9540_i0 PRJNA575566 9737 335 1.167883 3.91240805 Pseudomonadati 3379134 Bacteria Bacteria 47 0.00323   NR HBQ12409.1 2026763 g9540 i0 47.6 0.743283582089552 42 20 35.8 1 14 133 81 122 HBQ12409.1 hypothetical protein [Myxococcales bacterium] diamond 249 47 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;