RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA575566" and tax_phylum = "Cyanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Cyanobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA575566 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28847821 28847821 PRJNA575566_P_NODE_11748_length_306_cov_1.044898_g11551_i0 PRJNA575566 11748 306 1.044898 3.19738788 Stigonema ocellatum 221293 Bacteria Bacteria 54.3 4.57e-6   NR MBR8834845.1 221294 g11551 i0 53.1 0.480392156862745 49 22 47.1 1 153 10 152 200 MBR8834845.1 hypothetical protein [Stigonema ocellatum SAG 48.90 = DSM 106950] diamond 147 54.3 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Stigonemataceae Stigonema Stigonema ocellatum
32419206 32419206 PRJNA575566_P_NODE_25739_length_207_cov_0.876712_g25542_i0 PRJNA575566 25739 207 0.876712 1.81479384 Nostoc commune 1178 Bacteria Bacteria 67 4.51e-11   NR WP_251955386.1 1178 g25542 i0 48.6 2.1304347826087 72 32 98.6 2 3 206 186 256 WP_251955386.1 integrin alpha [Nostoc commune] diamond 441 67 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Nostocaceae Nostoc Nostoc commune

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;