RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

33 rows where bioproject = "PRJNA575566" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA575566 · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1136743 1136743 PRJNA575566_P_NODE_22241_length_220_cov_1.610063_g22044_i0 PRJNA575566 22241 220 1.610063 3.5421386 Hemiscylliidae 40580 Chordata Chordata 52.8 0.019   NTclustered gi|2096747322|ref|XM_043721243.1| 36176 g22044 i0 87.5 0.872727272727273 48 3 21 3 4 50 1195 1240 PREDICTED: Chiloscyllium plagiosum serine/threonine kinase 11 (stk11), transcript variant X2, mRNA blastn 192 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Orectolobiformes Hemiscylliidae Chiloscyllium Chiloscyllium plagiosum
1835597 1835597 PRJNA575566_P_NODE_29402_length_202_cov_0.907801_g29205_i0 PRJNA575566 29402 202 0.907801 1.83375802 Fringilla coelebs 37598 Chordata Chordata 52.8 0.018   NTclustered gi|2917613052|emb|OZ228692.1| 37598 g29205 i0 100 0.138613861386139 28 0 14 0 163 190 3186393 3186366 Fringilla coelebs genome assembly, chromosome: 5 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
3110833 3110833 PRJNA575566_P_NODE_13643_length_285_cov_0.785714_g13446_i0 PRJNA575566 13643 285 0.785714 2.2392849 Mus musculus 10090 Chordata Chordata 52.8 0.026   NTclustered gi|79759653|gb|AC166114.5| 10090 g13446 i0 100 0.196491228070175 28 0 10 0 256 283 76439 76466 Mus musculus BAC clone RP23-63J20 from chromosome 16, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
3111113 3111113 PRJNA575566_P_NODE_5043_length_466_cov_2.034568_g4846_i0 PRJNA575566 5043 466 2.034568 9.48108688 Dromiciops gliroides 33562 Chordata Chordata 100 1.59e-16   NTclustered gi|2102696398|ref|XM_043992798.1| 33562 g4846 i0 90.667 9.60729613733906 75 7 16 0 109 183 489 415 PREDICTED: Dromiciops gliroides ribulose-5-phosphate-3-epimerase (RPE), transcript variant X3, mRNA blastn 4477 100 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Microbiotheria Microbiotheriidae Dromiciops Dromiciops gliroides
6938076 6938076 PRJNA575566_P_NODE_15986_length_264_cov_0.945813_g15789_i0 PRJNA575566 15986 264 0.945813 2.49694632 Mus musculus 10090 Chordata Chordata 62.1 4.01e-5   NTclustered gi|78190186|gb|AC166158.3| 10090 g15789 i0 94.872 17.1590909090909 39 2 15 0 22 60 46984 47022 Mus musculus BAC clone RP24-244P14 from chromosome 1, complete sequence blastn 4530 62.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6938078 6938078 PRJNA575566_P_NODE_16226_length_262_cov_1.273632_g16029_i0 PRJNA575566 16226 262 1.273632 3.33691584 Mus musculus 10090 Chordata Chordata 52.8 0.024   NTclustered gi|84782041|gb|AC099719.9| 10090 g16029 i0 100 0.33206106870229 28 0 11 0 19 46 91683 91656 Mus musculus chromosome 7, clone RP23-394F19, complete sequence blastn 87 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
6938295 6938295 PRJNA575566_P_NODE_29426_length_202_cov_0.907801_g29229_i0 PRJNA575566 29426 202 0.907801 1.83375802 Lathamus discolor 678569 Chordata Chordata 119 1.71e-22   NTclustered gi|2740773566|ref|XM_065664458.1| 678569 g29229 i0 78.646 14.6683168316832 192 31 93 8 1 187 1538 1724 PREDICTED: Lathamus discolor V-type proton ATPase catalytic subunit A-like (LOC136006441), mRNA blastn 2963 119 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Lathamus Lathamus discolor
7514623 7514623 PRJNA575566_P_NODE_29346_length_202_cov_0.907801_g29149_i0 PRJNA575566 29346 202 0.907801 1.83375802 Suidae 9821 Chordata Chordata 56.5 0.001   NTclustered gi|545800890|ref|XM_005659664.1| 9823 g29149 i0 100 1.76732673267327 30 0 15 0 138 167 1605 1634 PREDICTED: Sus scrofa cation channel sperm associated 2 (CATSPER2), transcript variant X3, mRNA blastn 357 56.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
8789479 8789479 PRJNA575566_P_NODE_10367_length_325_cov_1.257576_g10170_i0 PRJNA575566 10367 325 1.257576 4.087122 Metazoa 33208 Chordata Chordata 58.4 6.56e-4   NTclustered gi|51870923|gb|AC147639.3| 10090 g10170 i0 100 15.7323076923077 31 0 10 0 30 60 50476 50446 Mus musculus BAC clone RP23-115M6 from 13, complete sequence blastn 5113 58.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
10764191 10764191 PRJNA575566_P_NODE_13769_length_283_cov_2.594595_g13572_i0 PRJNA575566 13769 283 2.594595 7.34270385 Lampetra fluviatilis 7748 Chordata Chordata 52.8 0.026   NTclustered gi|2805734110|emb|OZ078424.1| 7748 g13572 i0 96.875 0.113074204946996 32 0 11 1 181 211 63196 63165 Lampetra fluviatilis genome assembly, chromosome: 21 blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Lampetra Lampetra fluviatilis
10764404 10764404 PRJNA575566_P_NODE_27669_length_204_cov_0.895105_g27472_i0 PRJNA575566 27669 204 0.895105 1.8260142 Mus musculus 10090 Chordata Chordata 60.2 1.06e-4   NTclustered gi|34366487|emb|AL807744.7| 10090 g27472 i0 100 0.156862745098039 32 0 16 0 172 203 78339 78370 Mouse DNA sequence from clone RP23-174C4 on chromosome X, complete sequence blastn 32 60.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
12615708 12615708 PRJNA575566_P_NODE_22470_length_219_cov_1.215190_g22273_i0 PRJNA575566 22470 219 1.21519 2.6612661 Chordata 7711 Chordata Chordata 54.7 0.005   NTclustered gi|2721460845|emb|HG999683.4| 9103 g22273 i0 100 1.29223744292237 29 0 13 0 18 46 72722142 72722114 Meleagris gallopavo genome assembly, chromosome: Z blastn 283 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
13314071 13314071 PRJNA575566_P_NODE_23971_length_209_cov_1.729730_g23774_i0 PRJNA575566 23971 209 1.72973 3.6151357 Mus musculus 10090 Chordata Chordata 52.8 0.018   NTclustered gi|66793511|gb|AC158805.4| 10090 g23774 i0 96.774 0.148325358851675 31 1 15 0 127 157 39034 39004 Mus musculus 10 BAC RP24-222M1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
15164895 15164895 PRJNA575566_P_NODE_2772_length_621_cov_2.180357_g2582_i0 PRJNA575566 2772 621 2.180357 13.54001697 Metazoa 33208 Chordata Chordata 335 1.1199999999999997e-104   NR KAI8494249.1 7741 g2582 i0 79.3 16.280193236715 198 41 95.7 0 619 26 865 1062 KAI8494249.1 Elongation factor 1-alpha 1 [Branchiostoma belcheri] diamond 10110 335 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri
15164977 15164977 PRJNA575566_P_NODE_9372_length_341_cov_1.807143_g9175_i0 PRJNA575566 9372 341 1.807143 6.16235763 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 126 1.87e-24   NTclustered gi|6175639|gb|AF158726.1|AF158726 34764 g9175 i0 86.842 20.8211143695015 114 14 33 1 210 323 2660 2772 Oikopleura sp. internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 26S ribosomal RNA gene, complete sequence blastn 7100 126 1 Eukaryota Opisthokonta Metazoa Chordata Appendicularia Copelata Oikopleuridae Oikopleura Oikopleura sp.
15862657 15862657 PRJNA575566_P_NODE_17213_length_254_cov_1.326425_g17016_i0 PRJNA575566 17213 254 1.326425 3.3691195 Haemorhous mexicanus 30427 Chordata Chordata 63.9 1.07e-5   NTclustered gi|2586350821|ref|XM_059852382.1| 30427 g17016 i0 86.207 13.6141732283465 58 8 23 0 60 117 1868 1925 PREDICTED: Haemorhous mexicanus bromodomain adjacent to zinc finger domain 2B (BAZ2B), transcript variant X14, mRNA blastn 3458 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Haemorhous Haemorhous mexicanus
17714640 17714640 PRJNA575566_P_NODE_19994_length_234_cov_2.219653_g19797_i0 PRJNA575566 19994 234 2.219653 5.19398802 Metazoa 33208 Chordata Chordata 67.6 7.48e-7   NTclustered gi|354788691|gb|JN953192.1| 10090 g19797 i0 89.091 20.465811965812 55 4 23 2 129 182 28329 28382 Mus musculus targeted KO-first, conditional ready, lacZ-tagged mutant allele Myo15:tm1a(EUCOMM)Wtsi; transgenic blastn 4789 67.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
19686476 19686476 PRJNA575566_P_NODE_16896_length_257_cov_0.979592_g16699_i0 PRJNA575566 16896 257 0.979592 2.51755144 Polypterus senegalus 55291 Chordata Chordata 313 9.71e-81   NTclustered gi|1993937637|ref|XM_039741126.1| 55291 g16699 i0 89.286 16.9610894941634 252 24 97 3 8 257 1173 1423 PREDICTED: Polypterus senegalus E3 SUMO-protein ligase ZBED1-like (LOC120518358), transcript variant X2, mRNA blastn 4359 313 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
22236956 22236956 PRJNA575566_P_NODE_12398_length_298_cov_1.345992_g12201_i0 PRJNA575566 12398 298 1.345992 4.01105616 Carcharodon carcharias 13397 Chordata Chordata 54.7 0.008   NTclustered gi|2031757845|ref|XM_041188262.1| 13397 g12201 i0 96.875 0.322147651006711 32 1 11 0 166 197 2126 2095 PREDICTED: Carcharodon carcharias general transcription factor IIIC, polypeptide 2, beta (gtf3c2), transcript variant X3, mRNA blastn 96 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Lamniformes Alopiidae Carcharodon Carcharodon carcharias
22237136 22237136 PRJNA575566_P_NODE_2378_length_670_cov_1.761905_g2191_i0 PRJNA575566 2378 670 1.761905 11.8047635 Loxodonta africana 9785 Chordata Chordata 54.7 0.019   NTclustered gi|2710959655|ref|XR_010321073.1| 9785 g2191 i0 100 0.0432835820895522 29 0 4 0 180 208 1477 1449 PREDICTED: Loxodonta africana uncharacterized LOC135230397 (LOC135230397), ncRNA blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana
23512244 23512244 PRJNA575566_P_NODE_12319_length_299_cov_1.075630_g12122_i0 PRJNA575566 12319 299 1.07563 3.2161337 Pelobates fuscus 191477 Chordata Chordata 52.8 0.028   NTclustered gi|2688539772|ref|XM_063451694.1| 191477 g12122 i0 100 0.187290969899666 28 0 9 0 5 32 1823 1850 PREDICTED: Pelobates fuscus RNA binding motif protein 24 (RBM24), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pelobatidae Pelobates Pelobates fuscus
23512422 23512422 PRJNA575566_P_NODE_22759_length_217_cov_1.230769_g22562_i0 PRJNA575566 22759 217 1.230769 2.67076873 Colius striatus 57412 Chordata Chordata 52.8 0.019   NTclustered gi|2643749609|ref|XM_062003069.1| 57412 g22562 i0 100 0.258064516129032 28 0 13 0 55 82 8784 8811 PREDICTED: Colius striatus PMS1 homolog 1, mismatch repair system component (PMS1), transcript variant X1, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Coliiformes Coliidae Colius Colius striatus
24786270 24786270 PRJNA575566_P_NODE_23380_length_213_cov_1.565789_g23183_i0 PRJNA575566 23380 213 1.565789 3.33513057 Canis lupus 9612 Chordata Chordata 52.8 0.019   NTclustered gi|161760804|gb|AC208498.3| 9615 g23183 i0 100 0.131455399061033 28 0 13 0 77 104 29195 29222 Canis familiaris, clone XX-1807O15, complete sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
26934891 26934891 PRJNA575566_P_NODE_11242_length_312_cov_1.780876_g11045_i0 PRJNA575566 11242 312 1.780876 5.55633312 Chordata 7711 Chordata Chordata 46.2 0.0053   NR XP_053575473.1 8345 g11045 i0 69 0.932692307692308 29 9 27.9 0 207 293 1255 1283 XP_053575473.1 LOW QUALITY PROTEIN: hydrocephalus-inducing protein homolog [Bombina bombina] diamond 291 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bombinatoridae Bombina Bombina bombina
27441070 27441070 PRJNA575566_P_NODE_3443_length_560_cov_1.158317_g3247_i0 PRJNA575566 3443 560 1.158317 6.4865752 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 51.2 9.2e-4   NR XP_039766690.1 9258 g3247 i0 47.6 1.06607142857143 42 22 22.5 0 3 128 1725 1766 XP_039766690.1 LOW QUALITY PROTEIN: proprotein convertase subtilisin/kexin type 5 [Ornithorhynchus anatinus] diamond 597 51.6 0.992248062015504 Eukaryota Opisthokonta Metazoa Chordata Mammalia Monotremata Ornithorhynchidae Ornithorhynchus Ornithorhynchus anatinus
28387914 28387914 PRJNA575566_P_NODE_27086_length_205_cov_0.888889_g26889_i0 PRJNA575566 27086 205 0.888889 1.82222245 Opisthokonta 33154 Chordata Chordata 115 1.06e-28   NR XP_043933806.1 7888 g26889 i0 80.9 116.429268292683 68 13 99.5 0 204 1 24 91 XP_043933806.1 60S ribosomal protein L4 [Protopterus annectens] diamond 23868 116 0.991379310344828 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
28406032 28406032 PRJNA575566_P_NODE_29086_length_202_cov_0.907801_g28889_i0 PRJNA575566 29086 202 0.907801 1.83375802 Serinus canaria 9135 Chordata Chordata 42 0.0359   NR XP_050826426.1 9135 g28889 i0 57.1 1.33663366336634 35 15 52 0 38 142 59 93 XP_050826426.1 R-spondin-2 isoform X2 [Serinus canaria] diamond 270 42.4 0.990566037735849 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Serinus Serinus canaria
30395920 30395920 PRJNA575566_P_NODE_24393_length_209_cov_0.864865_g24196_i0 PRJNA575566 24393 209 0.864865 1.80756785 Eleutherodactylus coqui 57060 Chordata Chordata 52.8 6.83e-6   NR XP_066463888.1 57060 g24196 i0 50 0.660287081339713 46 21 66 1 1 138 46 89 XP_066463888.1 leukocyte receptor cluster member 9 [Eleutherodactylus coqui] diamond 138 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Eleutherodactylidae Eleutherodactylus Eleutherodactylus coqui
30584886 30584886 PRJNA575566_P_NODE_27173_length_205_cov_0.888889_g26976_i0 PRJNA575566 27173 205 0.888889 1.82222245 Staurois parvus 386267 Chordata Chordata 83.6 5.77e-19   NR CAI9618505.1 386267 g26976 i0 68.1 1.00975609756098 69 20 99.5 2 2 205 25 92 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 207 83.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
30932666 30932666 PRJNA575566_P_NODE_22434_length_219_cov_1.613924_g22237_i0 PRJNA575566 22434 219 1.613924 3.53449356 Aquarana catesbeiana 8400 Chordata Chordata 77.8 1.74e-16   NR ACO51987.1 8400 g22237 i0 56.3 9.78082191780822 64 28 87.7 0 22 213 1 64 ACO51987.1 60S acidic ribosomal protein P2 [Aquarana catesbeiana] diamond 2142 78.2 0.994884910485933 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Aquarana Aquarana catesbeiana
31817858 31817858 PRJNA575566_P_NODE_8557_length_358_cov_2.094276_g8360_i0 PRJNA575566 8557 358 2.094276 7.49750808 Phascolarctos cinereus 38626 Chordata Chordata 117 5.28e-29   NR XP_020844228.1 38626 g8360 i0 50 1.95251396648045 118 47 92.2 2 332 3 13 126 XP_020844228.1 ADP/ATP translocase 4 [Phascolarctos cinereus] diamond 699 117 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Diprotodontia Phascolarctidae Phascolarctos Phascolarctos cinereus
32545883 32545883 PRJNA575566_P_NODE_24559_length_209_cov_0.864865_g24362_i0 PRJNA575566 24559 209 0.864865 1.80756785 Varanus komodoensis 61221 Chordata Chordata 55.5 7.69e-7   NR KAF7250664.1 61221 g24362 i0 38.6 3.17224880382775 57 32 77.5 1 46 207 92 148 KAF7250664.1 Proprotein convertase subtilisin/kexin type 5, partial [Varanus komodoensis] diamond 663 55.5 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Varanidae Varanus Varanus komodoensis
32608751 32608751 PRJNA575566_P_NODE_27980_length_204_cov_0.895105_g27783_i0 PRJNA575566 27980 204 0.895105 1.8260142 Pseudonaja textilis 8673 Chordata Chordata 60.1 1.21e-8   NR XP_026573509.1 8673 g27783 i0 52.8 2.04411764705882 72 23 98.5 3 202 2 42 107 XP_026573509.1 cathepsin F [Pseudonaja textilis] diamond 417 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Elapidae Pseudonaja Pseudonaja textilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;