RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA575566" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA575566 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8213095 8213095 PRJNA575566_P_NODE_17627_length_251_cov_1.263158_g17430_i0 PRJNA575566 17627 251 1.263158 3.17052658 Campylobacter bilis 2691918 Bacteria Bacteria 62.1 3.78e-5   NTclustered gi|2797280160|gb|CP168723.1| 2691918 g17430 i0 100 0.262948207171315 33 0 13 0 35 67 475131 475163 Campylobacter bilis strain 63 chromosome, complete genome blastn 66 62.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter bilis
20962176 20962176 PRJNA575566_P_NODE_17897_length_249_cov_1.361702_g17700_i0 PRJNA575566 17897 249 1.361702 3.39063798 Campylobacter sp. GTC17093 3382266 Bacteria Bacteria 56.5 0.002   NTclustered gi|2866683719|dbj|AP038832.1| 3382266 g17700 i0 100 0.120481927710843 30 0 12 0 34 63 694577 694606 Campylobacter sp. GTC17093 DNA, complete genome blastn 30 56.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. GTC17093
28324720 28324720 PRJNA575566_P_NODE_29226_length_202_cov_0.907801_g29029_i0 PRJNA575566 29226 202 0.907801 1.83375802 Bacteria 2 Bacteria Bacteria 42.7 0.0216   NR WP_270860075.1 2593542 g29029 i0 38.3 1.55940594059406 47 29 69.8 0 191 51 513 559 WP_270860075.1 MULTISPECIES: tetratricopeptide repeat protein [unclassified Campylobacter] diamond 315 42.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;