RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA575566", tax_phylum = "Armatimonadota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA575566 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26730971 26730971 PRJNA575566_P_NODE_25861_length_207_cov_0.876712_g25664_i0 PRJNA575566 25861 207 0.876712 1.81479384 Armatimonadota bacterium 2033014 Bacteria Bacteria 74.7 1.22e-13   NR MDQ7859368.1 2033014 g25664 i0 62.5 3.69565217391304 64 22 91.3 2 190 2 179 241 MDQ7859368.1 AMP-binding protein [Armatimonadota bacterium] diamond 765 74.7 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
28658734 28658734 PRJNA575566_P_NODE_26947_length_205_cov_0.888889_g26750_i0 PRJNA575566 26947 205 0.888889 1.82222245 Fimbriimonadaceae bacterium 2682144 Bacteria Bacteria 49.7 8.05e-5   NR HRF61263.1 2682144 g26750 i0 38.9 0.790243902439024 54 33 79 0 7 168 68 121 HRF61263.1 APC family permease [Fimbriimonadaceae bacterium] diamond 162 49.7 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae   Fimbriimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;