RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA575566" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA575566 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4964781 4964781 PRJNA575566_P_NODE_1764_length_772_cov_4.430380_g1587_i0 PRJNA575566 1764 772 4.43038 34.2025336 Deinococcus 1298 Bacteria Bacteria 1421 0   NTclustered gi|2678098150|gb|PP359631.1| 47478 g1587 i0 99.87 104.708549222798 772 1 100 0 1 772 26 797 Deinococcus sp. strain BFCQ1 16S ribosomal RNA gene, partial sequence blastn 80835 1421 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
8789500 8789500 PRJNA575566_P_NODE_1327_length_887_cov_4.331719_g1169_i0 PRJNA575566 1327 887 4.331719 38.42234753 Deinococcus 1298 Bacteria Bacteria 1519 0   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g1169 i0 97.638 328.788049605412 889 14 100 7 1 887 74050 73167 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 291635 1533 0.990867579908676 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis
16439344 16439344 PRJNA575566_P_NODE_20953_length_228_cov_2.796407_g20756_i0 PRJNA575566 20953 228 2.796407 6.37580796 Deinococcus 1298 Bacteria Bacteria 416 6.259999999999998e-112   NTclustered gi|1751871007|dbj|AP021849.1| 57498 g20756 i0 99.561 205.561403508772 228 1 100 0 1 228 72872 73099 Deinococcus grandis ATCC 43672 DNA, complete genome blastn 46868 416 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus grandis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;