RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA575566", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA575566 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31280164 31280164 PRJNA575566_P_NODE_19975_length_235_cov_0.850575_g19778_i0 PRJNA575566 19975 235 0.850575 1.99885125 Luteolibacter sp. 1962973 Bacteria Bacteria 42.4 0.0459   NR MEO7098011.1 1962973 g19778 i0 40.8 0.625531914893617 49 25 58.7 2 17 154 313 360 MEO7098011.1 MBOAT family O-acyltransferase [Luteolibacter sp.] diamond 147 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
32860608 32860608 PRJNA575566_P_NODE_27240_length_205_cov_0.888889_g27043_i0 PRJNA575566 27240 205 0.888889 1.82222245 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 42.4 0.0322   NR HCF96245.1 2026799 g27043 i0 63 0.395121951219512 27 10 39.5 0 174 94 674 700 HCF96245.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 81 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;