RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA575566", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

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tax_superkingdom 1

tax_phylum 1

  • Fornicata · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA575566 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28311362 28311362 PRJNA575566_P_NODE_27526_length_204_cov_0.895105_g27329_i0 PRJNA575566 27526 204 0.895105 1.8260142 Giardia lamblia P15 658858 Fornicata other_Eukaryota 44.7 0.00483   NR EFO64161.1 658858 g27329 i0 35.4 1.76470588235294 65 39 95.6 2 4 198 353 414 EFO64161.1 VSP with INR [Giardia lamblia P15] diamond 360 44.7 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
30869344 30869344 PRJNA575566_P_NODE_17894_length_249_cov_1.361702_g17697_i0 PRJNA575566 17894 249 1.361702 3.39063798 Giardia lamblia P15 658858 Fornicata other_Eukaryota 51.2 4.06e-5   NR EFO63958.1 658858 g17697 i0 54.5 0.397590361445783 33 15 39.8 0 152 54 436 468 EFO63958.1 VSP [Giardia lamblia P15] diamond 99 51.2 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis
32369619 32369619 PRJNA575566_P_NODE_26419_length_206_cov_0.882759_g26222_i0 PRJNA575566 26419 206 0.882759 1.81848354 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 46.6 0.001   NR ESU42996.1 5741 g26222 i0 39.3 5.16990291262136 56 25 71.4 2 206 60 313 366 ESU42996.1 Variant-specific surface protein [Giardia intestinalis] diamond 1065 47 0.991489361702128 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia duodenalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;