RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA575566", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA575566 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19686639 19686639 PRJNA575566_P_NODE_26476_length_206_cov_0.882759_g26279_i0 PRJNA575566 26476 206 0.882759 1.81848354 Longimicrobium sp. 2029185 Bacteria Bacteria 99.8 1.74e-22   NR HET7229576.1 2029185 g26279 i0 65.7 3.90291262135922 67 23 97.6 0 206 6 385 451 HET7229576.1 phosphoenolpyruvate carboxykinase (ATP) [Longimicrobium sp.] diamond 804 99.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31596786 31596786 PRJNA575566_P_NODE_27736_length_204_cov_0.895105_g27539_i0 PRJNA575566 27736 204 0.895105 1.8260142 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 50.1 5.8e-5   NR HWB41411.1 2448054 g27539 i0 51.1 0.691176470588235 47 22 67.6 1 14 151 464 510 HWB41411.1 amino acid adenylation domain-containing protein [Gemmatimonadales bacterium] diamond 141 50.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;