RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA573544" and tax_phylum = "Basidiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA573544 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17137084 17137084 PRJNA573544_P_NODE_6014_length_250_cov_0.881356_g5996_i0 PRJNA573544 6014 250 0.881356 2.20339 Jaminaea rosea 1569628 Fungi Fungi 305 1.57e-78   NTclustered gi|1418892409|ref|XM_025505814.1| 1569628 g5996 i0 89.958 81.744 239 21 96 3 12 250 1492 1257 Jaminaea rosea putative TIF2-translation initiation factor eIF4A (BDZ90DRAFT_231317), mRNA blastn 20436 305 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Microstromatales   Jaminaea Jaminaea rosea
27314530 27314530 PRJNA573544_P_NODE_4503_length_273_cov_1.235000_g4485_i0 PRJNA573544 4503 273 1.235 3.37155 Cryptococcus 5206 Fungi Fungi 89.4 2.14e-18   NR OXG99136.1 1230057 g4485 i0 63.8 1.91208791208791 58 21 63.7 0 175 2 110 167 OXG99136.1 flavin-containing monooxygenase [Cryptococcus neoformans var. grubii A2-102-5] diamond 522 89.4 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus neoformans
28027156 28027156 PRJNA573544_P_NODE_7845_length_243_cov_0.917647_g7827_i0 PRJNA573544 7845 243 0.917647 2.22988221 Jaminaea rosea 1569628 Fungi Fungi 79 6.7e-15   NR XP_025364911.1 1569628 g7827 i0 71.4 0.864197530864197 70 14 81.5 3 198 1 8 75 XP_025364911.1 MFS general substrate transporter [Jaminaea rosea] diamond 210 79 1 Eukaryota Opisthokonta Fungi Basidiomycota Exobasidiomycetes Microstromatales   Jaminaea Jaminaea rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;