RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA573544", tax_phylum = "Bacillota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA573544 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13890139 13890139 PRJNA573544_P_NODE_2331_length_354_cov_1.110320_g2313_i0 PRJNA573544 2331 354 1.11032 3.9305328 Enterococcus 1350 Bacteria Bacteria 654 0   NTclustered gi|939198273|gb|CP010060.1| 44008 g2313 i0 100 484.629943502825 354 0 100 0 1 354 141236 140883 Enterococcus cecorum strain SA1 genome blastn 171559 654 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Enterococcaceae Enterococcus Enterococcus cecorum
28658713 28658713 PRJNA573544_P_NODE_4987_length_260_cov_0.930481_g4969_i0 PRJNA573544 4987 260 0.930481 2.4192506 Clostridia bacterium 2044939 Bacteria Bacteria 45.1 0.00339   NR MBQ8149526.1 2044939 g4969 i0 48.7 0.45 39 20 45 0 50 166 80 118 MBQ8149526.1 hypothetical protein [Clostridia bacterium] diamond 117 45.1 1 Bacteria   Bacillati Bacillota Clostridia       Clostridia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;