RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA573544" and tax_phylum = "Arthropoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Arthropoda · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA573544 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
559512 559512 PRJNA573544_P_NODE_7801_length_243_cov_0.917647_g7783_i0 PRJNA573544 7801 243 0.917647 2.22988221 Aphis gossypii 80765 Arthropoda Arthropoda 449 6.65e-122   NTclustered gi|1269216728|gb|MF471388.1| 80765 g7783 i0 100 33.4320987654321 243 0 100 0 1 243 1455 1213 Aphis gossypii cytochrome P450 4G51 mRNA, complete cds blastn 8124 449 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Aphididae Aphis Aphis gossypii
3110369 3110369 PRJNA573544_P_NODE_7383_length_245_cov_0.906977_g7365_i0 PRJNA573544 7383 245 0.906977 2.22209365 Thrips palmi 161013 Arthropoda Arthropoda 331 2.5400000000000002e-86   NTclustered gi|1841832338|ref|XM_034390005.1| 161013 g7365 i0 91.02 90.8734693877551 245 22 100 0 1 245 1225 981 PREDICTED: Thrips palmi guanine nucleotide-binding protein G(o) subunit alpha (LOC117647974), mRNA blastn 22264 331 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Thysanoptera Thripidae Thrips Thrips palmi
17137144 17137144 PRJNA573544_P_NODE_8214_length_237_cov_2.280488_g8196_i0 PRJNA573544 8214 237 2.280488 5.40475656 Helicoverpa assulta 52344 Arthropoda Arthropoda 52.8 0.021   NTclustered gi|2636206755|emb|OY979781.1| 52344 g8196 i0 100 0.118143459915612 28 0 12 0 71 98 8315242 8315215 Helicoverpa assulta genome assembly, chromosome: 7 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Lepidoptera Noctuidae Helicoverpa Helicoverpa assulta
18411271 18411271 PRJNA573544_P_NODE_2675_length_337_cov_2.045455_g2657_i0 PRJNA573544 2675 337 2.045455 6.89318335 Timema monikensis 170555 Arthropoda Arthropoda 58.4 6.84e-4   NTclustered gi|1946411097|emb|OB793204.1| 170555 g2657 i0 97.059 0.267062314540059 34 1 10 0 28 61 168510 168543 3_Tms_b3v08 blastn 90 58.4 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Phasmatodea Timematidae Timema Timema monikensis
18411332 18411332 PRJNA573544_P_NODE_5815_length_251_cov_0.876404_g5797_i0 PRJNA573544 5815 251 0.876404 2.19977404 Frankliniella occidentalis 133901 Arthropoda Arthropoda 193 1.28e-44   NTclustered gi|2347671036|ref|XM_026430240.2| 133901 g5797 i0 81.148 8.12350597609562 244 42 96 4 5 246 1018 777 PREDICTED: Frankliniella occidentalis nucleosome assembly protein 1-like 1-B (LOC113211766), transcript variant X2, mRNA blastn 2039 193 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Thysanoptera Thripidae Frankliniella Frankliniella occidentalis
25362473 25362473 PRJNA573544_P_NODE_4320_length_278_cov_1.521951_g4302_i0 PRJNA573544 4320 278 1.521951 4.23102378 Aphididae 27482 Arthropoda Arthropoda 514 2.7199999999999996e-141   NTclustered gi|2620630428|ref|XR_009661998.1| 40932 g4302 i0 100 94.2985611510791 278 0 100 0 1 278 4118 3841 PREDICTED: Rhopalosiphum padi large subunit ribosomal RNA (LOC132928126), rRNA blastn 26215 514 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hemiptera Aphididae Rhopalosiphum Rhopalosiphum padi
31104033 31104033 PRJNA573544_P_NODE_6195_length_249_cov_1.437500_g6177_i0 PRJNA573544 6195 249 1.4375 3.579375 Cotesia 32390 Arthropoda Arthropoda 80.9 8.74e-17   NR XP_044574885.1 32391 g6177 i0 60 5.06024096385542 70 26 84.3 2 248 39 118 185 XP_044574885.1 peroxiredoxin-5, mitochondrial [Cotesia glomerata] diamond 1260 80.9 1 Eukaryota Opisthokonta Metazoa Arthropoda Insecta Hymenoptera Braconidae Cotesia Cotesia glomerata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;