RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA572587" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA572587 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18410774 18410774 PRJNA572587_P_NODE_24395_length_227_cov_60.174157_g24067_i0 PRJNA572587 24395 227 60.174157 136.59533639 Cloacibacillus porcorum 1197717 Bacteria Bacteria 287 5.09e-73   NTclustered gi|1050315908|gb|CP016757.1| 1197717 g24067 i0 94.149 70.7400881057269 188 11 83 0 1 188 635890 635703 Cloacibacillus porcorum strain CL-84 chromosome, complete genome blastn 16058 287 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae Cloacibacillus Cloacibacillus porcorum
26636268 26636268 PRJNA572587_P_NODE_12701_length_327_cov_1.420863_g12373_i0 PRJNA572587 12701 327 1.420863 4.64622201 Acetomicrobium sp. S15 = DSM 1 1872099 Bacteria Bacteria 123 5.700000000000001e-30   NR WP_198469754.1 2529858 g12373 i0 58.5 1.95412844036697 106 44 97.2 0 8 325 622 727 WP_198469754.1 phosphoadenosine phosphosulfate reductase family protein [Acetomicrobium sp. S15 = DSM 107314] diamond 639 123 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Acetomicrobiaceae Acetomicrobium Acetomicrobium sp. S15 = DSM 107314
26713032 26713032 PRJNA572587_P_NODE_26161_length_219_cov_2.035294_g25833_i0 PRJNA572587 26161 219 2.035294 4.45729386 Bacteria 2 Bacteria Bacteria 92.4 1.66e-20   NR WP_005659958.1 47055 g25833 i0 69.2 4.45205479452055 65 20 89 0 197 3 51 115 WP_005659958.1 hydroxymethylglutaryl-CoA lyase [Dethiosulfovibrio peptidovorans] diamond 975 92.8 0.995689655172414 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Dethiosulfovibrio Dethiosulfovibrio peptidovorans
29731832 29731832 PRJNA572587_P_NODE_32450_length_194_cov_28.731034_g32122_i0 PRJNA572587 32450 194 28.731034 55.73820596 Synergistaceae bacterium 2053624 Bacteria Bacteria 84 5.81e-17   NR MBP8633506.1 2053624 g32122 i0 95.6 2.78350515463918 45 2 69.6 0 42 176 106 150 MBP8633506.1 TRAP transporter permease [Synergistaceae bacterium] diamond 540 84 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Synergistaceae   Synergistaceae bacterium
30598483 30598483 PRJNA572587_P_NODE_20353_length_251_cov_2.118812_g20025_i0 PRJNA572587 20353 251 2.118812 5.31821812 FCB group 1783270 Bacteria Bacteria 106 2.7699999999999993e-28   NR WP_008520715.1 428711 g20025 i0 86.5 5.25896414342629 52 7 62.2 0 188 33 1 52 WP_008520715.1 MULTISPECIES: rubredoxin [Jonquetella] diamond 1320 107 0.990654205607477 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Jonquetella  

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;