RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA572587", tax_phylum = "Nitrososphaerota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

  • Nitrososphaerota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA572587 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12037675 12037675 PRJNA572587_P_NODE_11670_length_343_cov_7.751701_g11342_i0 PRJNA572587 11670 343 7.751701 26.58833443 Nitrosopumilus zosterae 718286 Archaea Archaea 206 2.35e-48   NTclustered gi|2289589374|dbj|AP026695.1| 718286 g11342 i0 80.216 5.77842565597668 278 51 80 4 33 307 1125797 1125521 Nitrosopumilus zosterae NM25 DNA, complete genome blastn 1982 206 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Nitrosopumilus zosterae
24785206 24785206 PRJNA572587_P_NODE_35020_length_186_cov_12.014599_g34692_i0 PRJNA572587 35020 186 12.014599 22.34715414 Candidatus Nitrosopumilus sp. SW 2508726 Archaea Archaea 130 7.14e-26   NTclustered gi|1699461107|gb|CP035425.1| 2508726 g34692 i0 80.982 0.876344086021505 163 31 88 0 1 163 335158 334996 Candidatus Nitrosopumilus sp. SW chromosome, complete genome blastn 163 130 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosopumilus Candidatus Nitrosopumilus sp. SW
28847794 28847794 PRJNA572587_P_NODE_16168_length_285_cov_9.300847_g15840_i0 PRJNA572587 16168 285 9.300847 26.50741395 Nitrosarchaeum sp. 2026886 Archaea Archaea 57.8 2.87e-7   NR MCV0399677.1 2026886 g15840 i0 45 1.05263157894737 60 32 63.2 1 29 208 255 313 MCV0399677.1 glucose-1-phosphate thymidylyltransferase [Nitrosarchaeum sp.] diamond 300 57.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Nitrosarchaeum Nitrosarchaeum sp.
30553296 30553296 PRJNA572587_P_NODE_23673_length_231_cov_32.846154_g23345_i0 PRJNA572587 23673 231 32.846154 75.87461574 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 106 5.03e-28   NR HET9806764.1 2169593 g23345 i0 86.2 0.844155844155844 65 8 83.1 1 202 11 21 85 HET9806764.1 integrase core domain-containing protein [Nitrososphaeraceae archaeon] diamond 195 106 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;