RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA572587" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA572587 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28437639 28437639 PRJNA572587_P_NODE_2666_length_804_cov_5.851656_g2426_i0 PRJNA572587 2666 804 5.851656 47.04731424 Rhizophlyctis rosea 64517 Fungi Fungi 56.2 2.08e-5   NR KAJ3041132.1 64517 g2426 i0 28.6 0.690298507462687 185 113 68.7 4 676 125 51 217 KAJ3041132.1 ATP synthase F0 subcomplex subunit OSCP atp5 [Rhizophlyctis rosea] diamond 555 56.2 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea
32653435 32653435 PRJNA572587_P_NODE_7500_length_445_cov_11.757576_g7175_i0 PRJNA572587 7500 445 11.757576 52.3212132 Lobulomycetaceae 642599 Fungi Fungi 90.9 1.71e-20   NR KAJ3389295.1 109889 g7175 i0 72.2 2.93258426966292 54 15 36.4 0 420 259 55 108 KAJ3389295.1 60S ribosomal protein L37A [Lobulomyces angularis] diamond 1305 90.9 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales Lobulomycetaceae Lobulomyces Lobulomyces angularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;