RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA572587" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA572587 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6239583 6239583 PRJNA572587_P_NODE_3785_length_668_cov_5.360258_g3497_i0 PRJNA572587 3785 668 5.360258 35.80652344 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 373 4.24e-123   NR KXB98523.1 1662223 g3497 i0 95.3 1.71556886227545 191 9 85.8 0 667 95 116 306 KXB98523.1 MAG: nitrous oxide reductase [Chlorobi bacterium NICIL-2] diamond 1146 373 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
27806224 27806224 PRJNA572587_P_NODE_1944_length_921_cov_69.366972_g1769_i0 PRJNA572587 1944 921 69.366972 638.86981212 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 507 3.499999999999999e-177   NR KXB97535.1 1662223 g1769 i0 89.5 0.90228013029316 277 29 90.2 0 76 906 1 277 KXB97535.1 MAG: deoxyribodipyrimidine photolyase [Chlorobi bacterium NICIL-2] diamond 831 507 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
29146111 29146111 PRJNA572587_P_NODE_5329_length_546_cov_18.881288_g5009_i0 PRJNA572587 5329 546 18.881288 103.09183248 FCB group 1783270 Bacteria Bacteria 190 6.09e-53   NR KXB97810.1 1662223 g5009 i0 97.8 1.48351648351648 90 2 49.5 0 23 292 168 257 KXB97810.1 MAG: hypothetical protein AA908_05250 [Chlorobi bacterium NICIL-2] diamond 810 190 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2
30079361 30079361 PRJNA572587_P_NODE_8692_length_409_cov_2.413889_g8366_i0 PRJNA572587 8692 409 2.413889 9.87280601 Chlorobi bacterium NICIL-2 1662223 Bacteria Bacteria 131 1.83e-32   NR KXB97729.1 1662223 g8366 i0 95.7 0.506112469437653 69 3 50.6 0 408 202 531 599 KXB97729.1 MAG: hypothetical protein AA908_04795 [Chlorobi bacterium NICIL-2] diamond 207 131 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobi bacterium NICIL-2

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;