RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA572587" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA572587 · 9 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2411431 2411431 PRJNA572587_P_NODE_37682_length_179_cov_1.738462_g37354_i0 PRJNA572587 37682 179 1.738462 3.11184698 Chlamydiales bacterium 2047757 Bacteria Bacteria 99.8 7.119999999999999e-23   NR HSX38134.1 2047757 g37354 i0 93.2 6.85474860335195 59 4 98.9 0 2 178 332 390 HSX38134.1 phospho-N-acetylmuramoyl-pentapeptide-transferase [Chlamydiales bacterium] diamond 1227 99.8 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
27395790 27395790 PRJNA572587_P_NODE_30723_length_200_cov_12.602649_g30395_i0 PRJNA572587 30723 200 12.602649 25.205298 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 70.1 4.84e-12   NR MBX9924569.1 2047756 g30395 i0 55 0.9 60 27 90 0 1 180 7 66 MBX9924569.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 180 70.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
27504100 27504100 PRJNA572587_P_NODE_47003_length_161_cov_0.910714_g46675_i0 PRJNA572587 47003 161 0.910714 1.46624954 Pseudomonadati 3379134 Bacteria Bacteria 107 6.01e-26   NR WP_194845298.1 225148 g46675 i0 94.3 51.3540372670807 53 3 98.8 0 2 160 262 314 WP_194845298.1 V-type ATP synthase subunit B [Candidatus Rhabdochlamydia porcellionis] diamond 8268 108 0.990740740740741 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis
27553207 27553207 PRJNA572587_P_NODE_18184_length_267_cov_1.316514_g17856_i0 PRJNA572587 18184 267 1.316514 3.51509238 Chlamydiota bacterium 2081524 Bacteria Bacteria 115 1.79e-27   NR MES2199072.1 2081524 g17856 i0 75.6 0.876404494382023 78 19 87.6 0 262 29 284 361 MES2199072.1 AMP-binding protein [Chlamydiota bacterium] diamond 234 115 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
28405993 28405993 PRJNA572587_P_NODE_11466_length_346_cov_28.771044_g11139_i0 PRJNA572587 11466 346 28.771044 99.54781224 Chlamydiota bacterium 2081524 Bacteria Bacteria 44.3 0.0349   NR NGX57685.1 2081524 g11139 i0 33.3 0.936416184971098 108 57 85.8 4 313 17 702 803 NGX57685.1 ATP-dependent Clp protease ATP-binding subunit ClpC [Chlamydiota bacterium] diamond 324 44.3 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
29763445 29763445 PRJNA572587_P_NODE_12731_length_326_cov_24.541516_g12403_i0 PRJNA572587 12731 326 24.541516 80.00534216 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 68.6 9.01e-11   NR MBY0530076.1 2047756 g12403 i0 49.2 0.598159509202454 65 33 59.8 0 119 313 16 80 MBY0530076.1 filamentous hemagglutinin N-terminal domain-containing protein [Rhabdochlamydiaceae bacterium] diamond 195 68.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
29921713 29921713 PRJNA572587_P_NODE_10791_length_359_cov_7.541935_g10464_i0 PRJNA572587 10791 359 7.541935 27.07554665 Chlamydiota bacterium 2081524 Bacteria Bacteria 87.8 1.27e-17   NR MES2200127.1 2081524 g10464 i0 80.9 0.392757660167131 47 9 39.3 0 152 12 1 47 MES2200127.1 citrate (Si)-synthase [Chlamydiota bacterium] diamond 141 87.8 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
30616520 30616520 PRJNA572587_P_NODE_13553_length_314_cov_74.143396_g13225_i0 PRJNA572587 13553 314 74.143396 232.81026344 Candidatus Rubidus massiliensis 1444712 Bacteria Bacteria 70.1 2.01e-11   NR CDZ81263.1 1444712 g13225 i0 50 0.515923566878981 54 27 51.6 0 39 200 398 451 CDZ81263.1 geranylgeranyl reductase family protein [Candidatus Rubidus massiliensis] diamond 162 70.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis
32450978 32450978 PRJNA572587_P_NODE_14659_length_301_cov_22.527778_g14331_i0 PRJNA572587 14659 301 22.527778 67.80861178 Chlamydiota bacterium 2081524 Bacteria Bacteria 108 9.33e-27   NR MBM3197717.1 2081524 g14331 i0 59.5 0.837209302325581 84 34 83.7 0 300 49 56 139 MBM3197717.1 HAD family phosphatase [Chlamydiota bacterium] diamond 252 108 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;