RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA572587" and tax_phylum = "Candidatus Nomuraibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Nomuraibacteriota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA572587 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24785416 24785416 PRJNA572587_P_NODE_8780_length_406_cov_108.128852_g8453_i0 PRJNA572587 8780 406 108.128852 439.00313912 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 608 1.839999999999999e-169   NTclustered gi|2258875662|gb|CP060232.1| 2052152 g8453 i0 95.989 90.8669950738916 374 15 92 0 32 405 964046 963673 MAG: Candidatus Nomurabacteria bacterium isolate HK-STAS-PATE-40 chromosome, complete genome blastn 36892 608 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
28546102 28546102 PRJNA572587_P_NODE_28567_length_208_cov_20.987421_g28239_i0 PRJNA572587 28567 208 20.987421 43.65383568 Bacteria 2 Bacteria Bacteria 79.7 1.99e-15   NR HCC06026.1 2052152 g28239 i0 92.3 4.93269230769231 39 3 56.3 0 87 203 11 49 HCC06026.1 glycine--tRNA ligase [Candidatus Nomurabacteria bacterium] diamond 1026 80.1 0.995006242197254 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
29479168 29479168 PRJNA572587_P_NODE_17230_length_274_cov_54.555556_g16902_i0 PRJNA572587 17230 274 54.555556 149.48222344 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 75.1 2.21e-13   NR MDR0398114.1 2052152 g16902 i0 63.5 2.84671532846715 52 19 56.9 0 246 91 116 167 MDR0398114.1 LCP family protein [Candidatus Nomurabacteria bacterium] diamond 780 75.1 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium
31248531 31248531 PRJNA572587_P_NODE_17535_length_272_cov_4.609865_g17207_i0 PRJNA572587 17535 272 4.609865 12.5388328 Candidatus Nomurabacteria bacterium 2052152 Bacteria Bacteria 102 2.0899999999999994e-23   NR MDB5260689.1 2052152 g17207 i0 70.8 0.716911764705882 65 19 71.7 0 23 217 379 443 MDB5260689.1 UDP-N-acetylmuramoylalanine--D-glutamate ligase [Candidatus Nomurabacteria bacterium] diamond 195 102 1 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;