RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA572587" and tax_phylum = "Bacillariophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA572587 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1136083 1136083 PRJNA572587_P_NODE_9021_length_400_cov_13.330484_g8694_i0 PRJNA572587 9021 400 13.330484 53.321936 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 401 3.299999999999999e-107   NTclustered gi|725539117|gb|KM407590.1| 1574083 g8694 i0 87.395 25.93 357 35 89 8 1 356 348 1 Luticola muticopsis f. capitata isolate Ant003-G11 28S ribosomal RNA gene, partial sequence blastn 10372 401 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Diadesmidaceae Luticola Luticola muticopsis
1834234 1834234 PRJNA572587_P_NODE_22062_length_240_cov_19.832461_g21734_i0 PRJNA572587 22062 240 19.832461 47.5979064 Eucampia zodiacus 444606 SAR_Eukaryotes SAR_Eukaryotes 257 4.26e-64   NTclustered gi|1493678705|gb|MG821509.1| 444606 g21734 i0 92.778 66.325 180 9 75 4 26 205 533 708 Eucampia zodiacus isolate SKLMP_YG116 28S ribosomal RNA gene, partial sequence blastn 15918 257 1 Eukaryota Sar   Bacillariophyta Mediophyceae Hemiaulales Hemiaulaceae Eucampia Eucampia zodiacus
26699467 26699467 PRJNA572587_P_NODE_33421_length_191_cov_10.845070_g33093_i0 PRJNA572587 33421 191 10.84507 20.7140837 Cyclotella cryptica 29204 SAR_Eukaryotes SAR_Eukaryotes 59.3 1.2e-8   NR KAL3792559.1 29204 g33093 i0 70.3 0.581151832460733 37 11 58.1 0 174 64 165 201 KAL3792559.1 hypothetical protein HJC23_005529 [Cyclotella cryptica] diamond 111 59.3 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella cryptica
29069178 29069178 PRJNA572587_P_NODE_37448_length_179_cov_27.007692_g37120_i0 PRJNA572587 37448 179 27.007692 48.34376868 Navicula sp. 1923966 SAR_Eukaryotes SAR_Eukaryotes 64.7 4.24e-11   NR WPV72499.1 1923966 g37120 i0 73.8 0.70391061452514 42 9 67 1 24 143 35 76 WPV72499.1 putative LAGLIDADG homing endonuclease [Navicula sp.] diamond 126 64.7 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Navicula Navicula sp.
29195440 29195440 PRJNA572587_P_NODE_19949_length_254_cov_1.917073_g19621_i0 PRJNA572587 19949 254 1.917073 4.86936542 Bacillariaceae sp. 3061772 SAR_Eukaryotes SAR_Eukaryotes 51.2 4.51e-5   NR KAL3938522.1 3061772 g19621 i0 41.7 0.566929133858268 48 28 56.7 0 237 94 1275 1322 KAL3938522.1 MAG: hypothetical protein SGBAC_006589 [Bacillariaceae sp.] diamond 144 51.2 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae   Bacillariaceae sp.
32482486 32482486 PRJNA572587_P_NODE_24179_length_229_cov_1.416667_g23851_i0 PRJNA572587 24179 229 1.416667 3.24416743 Cyclotella atomus 382360 SAR_Eukaryotes SAR_Eukaryotes 42.4 0.043   NR KAL3770571.1 382360 g23851 i0 42.9 0.733624454148472 56 21 66.8 2 208 56 90 139 KAL3770571.1 hypothetical protein ACHAWO_000931 [Cyclotella atomus] diamond 168 42.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Stephanodiscales Stephanodiscaceae Cyclotella Cyclotella atomus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;