RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA572587", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA572587 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4964033 4964033 PRJNA572587_P_NODE_21324_length_244_cov_76.917949_g20996_i0 PRJNA572587 21324 244 76.917949 187.67979556 Gammaretrovirus 153135 Viruses Viruses 364 2.489999999999999e-96   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g20996 i0 99.5 81.8196721311475 200 1 82 0 22 221 4386 4187 Moloney murine leukemia virus, complete genome blastn 19964 364 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
10763387 10763387 PRJNA572587_P_NODE_3869_length_661_cov_4.323529_g3579_i0 PRJNA572587 3869 661 4.323529 28.57852669 Solendovirus venanicotianae 3048371 Viruses Viruses 466 1.98e-126   NTclustered gi|18450263|ref|NC_003378.1| 107324 g3579 i0 81.565 17.3131618759455 575 97 86 6 31 600 3869 3299 Tobacco vein clearing virus, complete genome blastn 11444 466 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Solendovirus Solendovirus venanicotianae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;