RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA572587", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA572587 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9487165 9487165 PRJNA572587_P_NODE_19628_length_256_cov_8.280193_g19300_i0 PRJNA572587 19628 256 8.280193 21.19729408 uncultured delta proteobacterium HF0070_10I02 710824 Bacteria Bacteria 180 1.02e-40   NTclustered gi|297181000|gb|GU474857.1| 710824 g19300 i0 84.409 107.70703125 186 25 72 4 69 252 6524 6707 Uncultured delta proteobacterium HF0070_10I02 genomic sequence blastn 27573 180 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0070_10I02
20262389 20262389 PRJNA572587_P_NODE_13156_length_320_cov_9.066421_g12828_i0 PRJNA572587 13156 320 9.066421 29.0125472 Deltaproteobacteria bacterium GWA2_45_12 1797805 Bacteria Bacteria 164 1.03e-44   NR OGP10945.1 1797805 g12828 i0 84.7 0.91875 98 15 91.9 0 3 296 161 258 OGP10945.1 MAG: copper-translocating P-type ATPase [Deltaproteobacteria bacterium GWA2_45_12] diamond 294 164 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium GWA2_45_12
28324712 28324712 PRJNA572587_P_NODE_5366_length_544_cov_2.460606_g5046_i0 PRJNA572587 5366 544 2.460606 13.38569664 Bacillota 1239 Bacteria Bacteria 79.7 6.93e-14   NR OPL08171.1 1775671 g5046 i0 37.8 2.00183823529412 119 68 62.3 1 12 350 16 134 OPL08171.1 MAG: hypothetical protein AVO33_01285 [delta proteobacterium ML8_F1] diamond 1089 79.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium ML8_F1
30882924 30882924 PRJNA572587_P_NODE_26454_length_217_cov_19.125000_g26126_i0 PRJNA572587 26454 217 19.125 41.50125 Bacteria 2 Bacteria Bacteria 43.5 0.0115   NR SBW00801.1 34034 g26126 i0 66.7 3.11059907834101 30 10 41.5 0 115 26 1 30 SBW00801.1 conserved hypothetical protein [uncultured delta proteobacterium] diamond 675 43.9 0.990888382687927 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;