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contig_metadata

2 rows where bioproject = "PRJNA572587", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA572587 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22813156 22813156 PRJNA572587_P_NODE_22838_length_236_cov_8.732620_g22510_i0 PRJNA572587 22838 236 8.73262 20.6089832 Peronospora 70742 SAR_Eukaryotes SAR_Eukaryotes 385 1.84e-102   NTclustered gi|23306497|gb|AY035480.1| 162105 g22510 i0 98.611 91.5508474576271 216 3 92 0 1 216 276 61 Peronospora trifolii-hybridi isolate MG 13-8 large subunit ribosomal RNA gene, partial sequence blastn 21606 388 0.992268041237113 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora trifolii-hybridi
29984773 29984773 PRJNA572587_P_NODE_7471_length_446_cov_16.098237_g7146_i0 PRJNA572587 7471 446 16.098237 71.79813702 Saprolegnia diclina VS2 112098 SAR_Eukaryotes SAR_Eukaryotes 59.7 7.54e-9   NR XP_008614143.1 1156394 g7146 i0 87.5 0.2152466367713 32 4 21.5 0 93 188 1 32 XP_008614143.1 hypothetical protein SDRG_09954 [Saprolegnia diclina VS20] diamond 96 59.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;