RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA572587", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA572587 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27237487 27237487 PRJNA572587_P_NODE_5143_length_558_cov_69.043222_g4827_i0 PRJNA572587 5143 558 69.043222 385.26117876 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 75.9 2.35e-13   NR CEP00996.1 37360 g4827 i0 75.6 0.935483870967742 45 11 24.2 0 424 290 148 192 CEP00996.1 hypothetical protein PBRA_008308 [Plasmodiophora brassicae] diamond 522 75.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
32387411 32387411 PRJNA572587_P_NODE_10979_length_355_cov_23.506536_g10652_i0 PRJNA572587 10979 355 23.506536 83.4482028 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 73.9 2.82e-13   NR CEO96912.1 37360 g10652 i0 63.5 1.28450704225352 52 19 43.9 0 21 176 171 222 CEO96912.1 hypothetical protein PBRA_005516 [Plasmodiophora brassicae] diamond 456 73.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;