RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA572587", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA572587 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7513765 7513765 PRJNA572587_P_NODE_15346_length_294_cov_1.791837_g15018_i0 PRJNA572587 15346 294 1.791837 5.26800078 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 544 3.69e-150   NTclustered gi|1220542|gb|L25635.1|TOXRRG 5811 g15018 i0 100 99.7380952380952 294 0 100 0 1 294 1084 791 Toxoplasma gondii strain RH 5.8S ribosomal RNA and ribosomal RNA large subunit genes, complete sequence blastn 29323 544 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
9487489 9487489 PRJNA572587_P_NODE_46988_length_161_cov_0.910714_g46660_i0 PRJNA572587 46988 161 0.910714 1.46624954 Toxoplasma gondii 5811 SAR_Eukaryotes SAR_Eukaryotes 292 7.24e-75   NTclustered gi|820701449|tpe|LN714501.1| 432359 g46660 i0 99.379 1 161 1 100 0 1 161 1397065 1397225 TPA_asm: Toxoplasma gondii VEG, chromosome chrXI, complete genome blastn 161 292 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
13890001 13890001 PRJNA572587_P_NODE_31411_length_198_cov_4.899329_g31083_i0 PRJNA572587 31411 198 4.899329 9.70067142 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 366 5.4e-97   NTclustered gi|1890525007|pdb|5XXB|1 5811 g31083 i0 100 99.1161616161616 198 0 100 0 1 198 1348 1545 Chain 1, 25S RNA blastn 19625 366 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
13890061 13890061 PRJNA572587_P_NODE_43371_length_166_cov_2.205128_g43043_i0 PRJNA572587 43371 166 2.205128 3.66051248 Sarcocystidae 5809 SAR_Eukaryotes SAR_Eukaryotes 307 2.69e-79   NTclustered gi|8927029|gb|AF076865.1|AF076865 5811 g43043 i0 100 99.9939759036145 166 0 100 0 1 166 350 515 Toxoplasma gondii strain RH large subunit ribosomal RNA gene, partial sequence blastn 16599 307 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
18987373 18987373 PRJNA572587_P_NODE_44255_length_165_cov_0.879310_g43927_i0 PRJNA572587 44255 165 0.87931 1.4508615 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 305 9.59e-79   NTclustered gi|13094957|gb|AF323780.1|AF323780 5811 g43927 i0 100 4.02424242424242 165 0 100 0 1 165 1204 1040 Toxoplasma gondii clone TgESTzy64e04.r1, mRNA sequence blastn 664 305 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii
25362386 25362386 PRJNA572587_P_NODE_43640_length_166_cov_0.871795_g43312_i0 PRJNA572587 43640 166 0.871795 1.4471797 Toxoplasma 5810 SAR_Eukaryotes SAR_Eukaryotes 307 2.69e-79   NTclustered gi|820700576|tpe|LN714500.1| 432359 g43312 i0 100 2 166 0 100 0 1 166 2678492 2678657 TPA_asm: Toxoplasma gondii VEG, chromosome chrX, complete genome blastn 332 307 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Toxoplasma Toxoplasma gondii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;