RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA572587", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA572587 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23511183 23511183 PRJNA572587_P_NODE_21619_length_243_cov_2.283505_g21291_i0 PRJNA572587 21619 243 2.283505 5.54891715 Ignavibacteriota bacterium 2026749 Bacteria Bacteria 213 9.49e-51   NTclustered gi|1850842921|gb|CP053447.1| 2026749 g21291 i0 84.651 0.88477366255144 215 32 88 1 18 231 3535018 3535232 Ignavibacteriae bacterium isolate IGN3 chromosome blastn 215 213 1 Bacteria FCB group Pseudomonadati Ignavibacteriota         Ignavibacteriota bacterium
29605412 29605412 PRJNA572587_P_NODE_10090_length_374_cov_3.984615_g9763_i0 PRJNA572587 10090 374 3.984615 14.9024601 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 108 5.71e-25   NR HOP49578.1 2049428 g9763 i0 87.5 0.513368983957219 64 4 51.3 1 24 215 245 304 HOP49578.1 mannose-6-phosphate isomerase, class I [Ignavibacteriales bacterium] diamond 192 108 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
29618960 29618960 PRJNA572587_P_NODE_19230_length_259_cov_5.885714_g18902_i0 PRJNA572587 19230 259 5.885714 15.24399926 Bacteria 2 Bacteria Bacteria 90.5 1.54e-20   NR MBM4176972.1 2053306 g18902 i0 56.8 3.9034749034749 81 31 91.5 2 239 3 76 154 MBM4176972.1 transposase [Ignavibacteria bacterium] diamond 1011 91.3 0.991237677984666 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;