RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA572587", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA572587 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1834181 1834181 PRJNA572587_P_NODE_19022_length_260_cov_96.815166_g18694_i0 PRJNA572587 19022 260 96.815166 251.7194316 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 224 4.739999999999999e-54   NTclustered gi|2874253978|emb|OY970303.1| 412054 g18694 i0 84.362 88.4 243 23 90 15 1 235 1904239 1904474 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 22984 224 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
17136659 17136659 PRJNA572587_P_NODE_334_length_1686_cov_41.717166_g306_i0 PRJNA572587 334 1686 41.717166 703.35141876 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 1083 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g306 i0 86.9 107.08956109134 1000 89 99 24 5 974 1903941 1902954 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 180553 1083 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
29114282 29114282 PRJNA572587_P_NODE_10188_length_371_cov_122.006211_g9861_i0 PRJNA572587 10188 371 122.006211 452.64304281 Pseudomonadati 3379134 Bacteria Bacteria 50.8 1.22e-4   NR MBL8989887.1 2026742 g9861 i0 68.8 0.485175202156334 32 10 25.9 0 214 119 142 173 MBL8989887.1 GNAT family N-acetyltransferase [Gemmatimonadota bacterium] diamond 180 50.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
32703076 32703076 PRJNA572587_P_NODE_36300_length_182_cov_118.437229_g35972_i0 PRJNA572587 36300 182 118.437229 215.55575678 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 76.3 2.38e-14   NR MFQ5704629.1 2448054 g35972 i0 85.4 1.31868131868132 41 5 65.9 1 177 58 247 287 MFQ5704629.1 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme [Gemmatimonadales bacterium] diamond 240 76.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;