RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA565778" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565778 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1833779 1833779 PRJNA565778_S_NODE_33322_length_189_cov_5.421053_g33026_i0 PRJNA565778 33322 189 5.421053 10.24579017 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 67.6 5.79e-7   NTclustered gi|2874253779|emb|OY969763.1| 412056 g33026 i0 97.436 0.206349206349206 39 1 21 0 118 156 3833289 3833327 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 39 67.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
6239403 6239403 PRJNA565778_S_NODE_4045_length_506_cov_7.268657_g3831_i0 PRJNA565778 4045 506 7.268657 36.77940442 Luteolibacter 518753 Bacteria Bacteria 455 3.2300000000000004e-123   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g3831 i0 84.829 155.065217391304 468 54 91 14 26 486 276278 276735 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 78463 457 0.99562363238512 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis
28703822 28703822 PRJNA565778_S_NODE_26267_length_215_cov_151.303371_g25971_i0 PRJNA565778 26267 215 151.303371 325.30224765 Pseudomonadati 3379134 Bacteria Bacteria 43.9 0.00434   NR MSU62638.1 2024890 g25971 i0 39.7 1.54883720930233 58 34 80.9 1 176 3 73 129 MSU62638.1 hypothetical protein [Pedosphaera sp.] diamond 333 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;