RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA565778" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565778 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29335212 29335212 PRJNA565778_S_NODE_37949_length_175_cov_2.826087_g37653_i0 PRJNA565778 37949 175 2.826087 4.94565225 Pseudomonadati 3379134 Bacteria Bacteria 67 3.49e-11   NR WP_008870065.1 488939 g37653 i0 54.5 6.56571428571429 55 25 94.3 0 5 169 251 305 WP_008870065.1 hypothetical protein [Desulfonatronospira thiodismutans] diamond 1149 67 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfonatronovibrionaceae Desulfonatronospira Desulfonatronospira thiodismutans
30932627 30932627 PRJNA565778_S_NODE_19834_length_248_cov_333.061611_g19538_i0 PRJNA565778 19834 248 333.061611 825.99279528 Smithella sp. 2053614 Bacteria Bacteria 88.2 1.14e-18   NR MEN6621319.1 2053614 g19538 i0 60 0.846774193548387 70 28 84.7 0 210 1 80 149 MEN6621319.1 hypothetical protein [Smithella sp.] diamond 210 88.2 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
30995834 30995834 PRJNA565778_S_NODE_22814_length_232_cov_1.800000_g22518_i0 PRJNA565778 22814 232 1.8 4.176 Thermodesulfobacteriales bacterium 2528040 Bacteria Bacteria 50.8 4.37e-5   NR TFG75492.1 2528040 g22518 i0 38.6 1.47413793103448 57 35 73.7 0 4 174 251 307 TFG75492.1 MAG: type IV pilus assembly protein PilM [Thermodesulfobacteriales bacterium] diamond 342 50.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales     Thermodesulfobacteriales bacterium
31596720 31596720 PRJNA565778_S_NODE_12156_length_314_cov_9.985560_g11860_i0 PRJNA565778 12156 314 9.98556 31.3546584 Caldimicrobium sp. 2024963 Bacteria Bacteria 89 8.87e-20   NR NAZ30503.1 2024963 g11860 i0 64.6 0.621019108280255 65 23 62.1 0 309 115 101 165 NAZ30503.1 hypothetical protein [Caldimicrobium sp.] diamond 195 89 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Caldimicrobium Caldimicrobium sp.
31722926 31722926 PRJNA565778_S_NODE_22937_length_231_cov_5.134021_g22641_i0 PRJNA565778 22937 231 5.134021 11.85958851 Thermodesulfobacterium commune 1741 Bacteria Bacteria 44.7 0.00298   NR WP_038062177.1 1741 g22641 i0 94.4 0.233766233766234 18 1 23.4 0 59 6 1 18 WP_038062177.1 hypothetical protein [Thermodesulfobacterium commune] diamond 54 44.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Thermodesulfobacteria Thermodesulfobacteriales Thermodesulfobacteriaceae Thermodesulfobacterium Thermodesulfobacterium commune
32039408 32039408 PRJNA565778_S_NODE_34658_length_185_cov_4.391892_g34362_i0 PRJNA565778 34658 185 4.391892 8.1250002 Smithella sp. 2053614 Bacteria Bacteria 52.8 5.33e-7   NR MEN6621307.1 2053614 g34362 i0 43.6 0.891891891891892 55 30 89.2 1 5 169 25 78 MEN6621307.1 hypothetical protein [Smithella sp.] diamond 165 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae Smithella Smithella sp.
32545834 32545834 PRJNA565778_S_NODE_17679_length_263_cov_3.066372_g17383_i0 PRJNA565778 17679 263 3.066372 8.06455836 Candidatus Dadabacteria bacterium 2080303 Bacteria Bacteria 81.6 8.03e-17   NR NIP30736.1 2080303 g17383 i0 62.7 1.57414448669202 67 25 76.4 0 45 245 7 73 NIP30736.1 DUF2828 family protein [Candidatus Dadabacteria bacterium] diamond 414 81.6 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Candidatus Dadabacteria       Candidatus Dadabacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;