RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA565778" and tax_phylum = "Planctomycetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Planctomycetota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565778 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4385605 4385605 PRJNA565778_S_NODE_15564_length_280_cov_4.777778_g15268_i0 PRJNA565778 15564 280 4.777778 13.3777784 Isosphaeraceae bacterium EP7 3139350 Bacteria Bacteria 195 4.05e-45   NTclustered gi|2719878338|gb|CP151667.1| 3139350 g15268 i0 95.122 40.2142857142857 123 6 44 0 33 155 4040193 4040315 Isosphaeraceae bacterium EP7 chromosome, complete genome blastn 11260 195 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium EP7
9486574 9486574 PRJNA565778_S_NODE_21128_length_240_cov_636.866995_g20832_i0 PRJNA565778 21128 240 636.866995 1528.480788 Pirellulales bacterium 2715253 Bacteria Bacteria 193 1.22e-44   NTclustered gi|2874253964|emb|OY970289.1| 2715253 g20832 i0 83.981 6.55416666666667 206 28 85 4 2 204 313048 312845 MAG: Pirellulales bacterium isolate MFD05442.bin.c.2 genome assembly, chromosome: 1 blastn 1573 193 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium
14586938 14586938 PRJNA565778_S_NODE_16192_length_274_cov_388.755274_g15896_i0 PRJNA565778 16192 274 388.755274 1065.18945076 Frigoriglobus tundricola 2774151 Bacteria Bacteria 285 2.28e-72   NTclustered gi|1870286614|gb|CP053452.2| 2774151 g15896 i0 90.654 324.667883211679 214 20 78 0 22 235 4958815 4958602 Frigoriglobus tundricola strain PL17 chromosome, complete genome blastn 88959 285 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Frigoriglobus Frigoriglobus tundricola
28879443 28879443 PRJNA565778_S_NODE_27628_length_210_cov_2.676301_g27332_i0 PRJNA565778 27628 210 2.676301 5.6202321 Planctomycetota bacterium 2026780 Bacteria Bacteria 75.9 5.25e-14   NR HRJ77648.1 2026780 g27332 i0 90.2 0.585714285714286 41 4 58.6 0 198 76 774 814 HRJ77648.1 protein DpdF [Planctomycetota bacterium] diamond 123 75.9 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
29858278 29858278 PRJNA565778_S_NODE_8591_length_368_cov_3.042296_g8295_i0 PRJNA565778 8591 368 3.042296 11.19564928 Phycisphaerales bacterium 2052180 Bacteria Bacteria 47.8 0.00213   NR MBY0309332.1 2052180 g8295 i0 56.4 0.448369565217391 55 18 44 2 29 190 22 71 MBY0309332.1 ankyrin repeat domain-containing protein [Phycisphaerales bacterium] diamond 165 47.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
31862950 31862950 PRJNA565778_S_NODE_37357_length_177_cov_2.507143_g37061_i0 PRJNA565778 37357 177 2.507143 4.43764311 Bacteria 2 Bacteria Bacteria 85.1 3.51e-19   NR MCI0458091.1 2052164 g37061 i0 69.2 4.72881355932203 52 16 88.1 0 1 156 83 134 MCI0458091.1 class I SAM-dependent methyltransferase [Gemmataceae bacterium] diamond 837 85.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   Gemmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;