RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA565778", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Pisuviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565778 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19684700 19684700 PRJNA565778_S_NODE_24636_length_222_cov_73.935135_g24340_i0 PRJNA565778 24636 222 73.935135 164.1359997 Skokie dicistro-like virus 2789443 Viruses Viruses 167 6.739999999999999e-37   NTclustered gi|1935607033|gb|MT747992.1| 2789443 g24340 i0 85.535 0.716216216216216 159 23 72 0 37 195 3131 3289 Skokie dicistro-like virus strain USAdf-2 polyprotein 1 and polyprotein 2 genes, complete cds blastn 159 167 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
20960291 20960291 PRJNA565778_S_NODE_16097_length_275_cov_103.189076_g15801_i0 PRJNA565778 16097 275 103.189076 283.769959 Nepovirus avii 3047741 Viruses Viruses 403 6.06e-108   NTclustered gi|498716|emb|Z34265.1| 12615 g15801 i0 98.268 80.2472727272727 231 3 84 1 9 238 1588 1358 Cherry leaf roll virus (walnut) genomic RNA (1588bp) blastn 22068 403 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Nepovirus Nepovirus avii
30742972 30742972 PRJNA565778_S_NODE_17274_length_266_cov_2.043668_g16978_i0 PRJNA565778 17274 266 2.043668 5.43615688 Iflaviridae sp. 1955145 Viruses Viruses 112 9.89e-27   NR XCO48891.1 1955145 g16978 i0 56.8 0.992481203007519 88 38 99.2 0 2 265 383 470 XCO48891.1 MAG: putative ORF1 protein, partial [Iflaviridae sp.] diamond 264 112 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae   Iflaviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;