RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA565778" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA565778 · 10 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
558423 558423 PRJNA565778_S_NODE_3781_length_520_cov_265.521739_g3577_i0 PRJNA565778 3781 520 265.521739 1380.7130428 Potexvirus pepini 3433856 Viruses Viruses 876 0   NTclustered gi|2675378618|gb|PP116314.1| 112229 g3577 i0 99.38 87.7403846153846 484 2 93 1 38 520 5898 6381 MAG: Pepino mosaic virus isolate 7452_PepMV, complete genome blastn 45625 876 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
3108972 3108972 PRJNA565778_S_NODE_13183_length_302_cov_441.962264_g12887_i0 PRJNA565778 13183 302 441.962264 1334.72603728 Tobamovirus tabaci 3432891 Viruses Viruses 473 5.059999999999999e-129   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g12887 i0 98.868 87.7748344370861 265 3 88 0 1 265 2571 2307 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 26508 473 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
3108988 3108988 PRJNA565778_S_NODE_1403_length_751_cov_11.747899_g1303_i0 PRJNA565778 1403 751 11.747899 88.22672149 Tobamovirus tabaci 3432891 Viruses Viruses 1306 0   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g1303 i0 99.444 95.7470039946738 719 4 96 0 1 719 5614 4896 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 71906 1306 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
4385857 4385857 PRJNA565778_S_NODE_33844_length_187_cov_194.833333_g33548_i0 PRJNA565778 33844 187 194.833333 364.33833271 Tobamovirus tabaci 3432891 Viruses Viruses 268 1.46e-67   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g33548 i0 99.329 79.6844919786096 149 0 79 1 38 185 3672 3820 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 14901 268 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
10762756 10762756 PRJNA565778_S_NODE_4089_length_503_cov_73.881974_g3875_i0 PRJNA565778 4089 503 73.881974 371.62632922 Tobamovirus tabaci 3432891 Viruses Viruses 846 0   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g3875 i0 99.57 92.4453280318091 465 1 92 1 3 466 3820 3356 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 46500 846 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
12037131 12037131 PRJNA565778_S_NODE_11550_length_321_cov_258.095070_g11254_i0 PRJNA565778 11550 321 258.09507 828.4851747 Tobamovirus tabaci 3432891 Viruses Viruses 512 1.1499999999999998e-140   NTclustered gi|2813525801|dbj|LC846392.1| 12242 g11254 i0 99.643 86.8847352024922 280 1 87 0 5 284 5967 5688 Tobacco mosaic virus TMV-Du-CNU1 genomic RNA, complete genome blastn 27890 512 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
13312201 13312201 PRJNA565778_S_NODE_22551_length_233_cov_6.224490_g22255_i0 PRJNA565778 22551 233 6.22449 14.5030617 Potexvirus pepini 3433856 Viruses Viruses 431 2.2899999999999996e-116   NTclustered gi|57282636|emb|AJ606361.1| 112229 g22255 i0 100 81.4892703862661 233 0 100 0 1 233 6185 6417 Pepino mosaic virus complete genome, isolate LP-2001 blastn 18987 431 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
17136184 17136184 PRJNA565778_S_NODE_8674_length_366_cov_4.601824_g8378_i0 PRJNA565778 8674 366 4.601824 16.84267584 Potexvirus pepini 3433856 Viruses Viruses 625 1.6299999999999995e-174   NTclustered gi|251821320|emb|FN429033.1| 112229 g8378 i0 100 92.3415300546448 338 0 92 0 29 366 239 576 Pepino mosaic virus partial CP gene for coat protein, strain PV-0554, genomic RNA blastn 33797 625 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Alphaflexiviridae Potexvirus Potexvirus pepini
20960248 20960248 PRJNA565778_S_NODE_12697_length_308_cov_45.535055_g12401_i0 PRJNA565778 12697 308 45.535055 140.2479694 Tobamovirus tabaci 3432891 Viruses Viruses 472 1.86e-128   NTclustered gi|2217162015|gb|OL584366.1| 12242 g12401 i0 98.864 85.7077922077922 264 3 86 0 37 300 1440 1703 Tobacco mosaic virus isolate DSMZ PV-1199 genomic sequence blastn 26398 472 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
20960394 20960394 PRJNA565778_S_NODE_23477_length_228_cov_7.607330_g23181_i0 PRJNA565778 23477 228 7.60733 17.3447124 Bromovirus BMV 3427622 Viruses Viruses 344 2.99e-90   NTclustered gi|2214792991|gb|MW581063.1| 12302 g23181 i0 98.469 28.3684210526316 196 2 86 1 1 195 1189 994 Brome mosaic virus isolate BMV-R movement protein and coat protein genes, complete cds blastn 6468 344 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Bromoviridae Bromovirus Bromovirus BMV

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;