RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA565778" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA565778 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1833979 1833979 PRJNA565778_S_NODE_9882_length_345_cov_44.100649_g9586_i0 PRJNA565778 9882 345 44.100649 152.14723905 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 573 5.629999999999999e-159   NTclustered gi|336478352|emb|FR872580.1| 765952 g9586 i0 100 0.898550724637681 310 0 90 0 36 345 1597045 1596736 Parachlamydia acanthamoebae UV-7, complete genome blastn 310 573 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
19684965 19684965 PRJNA565778_S_NODE_6796_length_408_cov_2.908356_g6522_i0 PRJNA565778 6796 408 2.908356 11.86609248 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 702 0   NTclustered gi|336478352|emb|FR872580.1| 765952 g6522 i0 100 0.931372549019608 380 0 93 0 1 380 1910955 1910576 Parachlamydia acanthamoebae UV-7, complete genome blastn 380 702 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
23510527 23510527 PRJNA565778_S_NODE_16299_length_274_cov_2.303797_g16003_i0 PRJNA565778 16299 274 2.303797 6.31240378 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 496 9.67e-136   NTclustered gi|336478352|emb|FR872580.1| 765952 g16003 i0 99.27 1 274 2 100 0 1 274 2776375 2776102 Parachlamydia acanthamoebae UV-7, complete genome blastn 274 496 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
23510917 23510917 PRJNA565778_S_NODE_9039_length_359_cov_178.478261_g8743_i0 PRJNA565778 9039 359 178.478261 640.73695699 Parachlamydia acanthamoebae 83552 Bacteria Bacteria 582 9.75e-162   NTclustered gi|336478352|emb|FR872580.1| 765952 g8743 i0 99.074 0.902506963788301 324 3 90 0 36 359 2775805 2776128 Parachlamydia acanthamoebae UV-7, complete genome blastn 324 582 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae
27584980 27584980 PRJNA565778_S_NODE_25824_length_217_cov_37.061111_g25528_i0 PRJNA565778 25824 217 37.061111 80.42261087 Parachlamydia sp. 2052048 Bacteria Bacteria 55.5 8.76e-7   NR MCE5318139.1 2052048 g25528 i0 48.4 0.857142857142857 62 32 85.7 0 31 216 417 478 MCE5318139.1 ATP-binding protein [Parachlamydia sp.] diamond 186 55.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
29826671 29826671 PRJNA565778_S_NODE_19691_length_249_cov_933.174528_g19395_i0 PRJNA565778 19691 249 933.174528 2323.60457472 Chlamydiales bacterium 2047757 Bacteria Bacteria 87 3.68e-20   NR MCE5293497.1 2047757 g19395 i0 52.1 0.879518072289157 73 32 84.3 1 211 2 21 93 MCE5293497.1 hypothetical protein [Chlamydiales bacterium] diamond 219 87 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32387397 32387397 PRJNA565778_S_NODE_12719_length_308_cov_6.191882_g12423_i0 PRJNA565778 12719 308 6.191882 19.07099656 Chlamydiales bacterium 2047757 Bacteria Bacteria 108 3.45e-28   NR MCE5293497.1 2047757 g12423 i0 51.6 0.886363636363636 91 41 85.7 1 265 2 3 93 MCE5293497.1 hypothetical protein [Chlamydiales bacterium] diamond 273 108 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;