RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA565778", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA565778 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10064334 10064334 PRJNA565778_S_NODE_39868_length_166_cov_2.093023_g39572_i0 PRJNA565778 39868 166 2.093023 3.47441818 Metazoa 33208 Nematoda Nematoda 279 5.86e-71   NTclustered gi|1174020828|gb|KY887583.1| 6293 g39572 i0 100 90.9698795180723 151 0 91 0 16 166 569 419 Wuchereria bancrofti isolate AP10 small subunit ribosomal RNA gene, partial sequence blastn 15101 279 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
11339012 11339012 PRJNA565778_S_NODE_33349_length_189_cov_4.013158_g33053_i0 PRJNA565778 33349 189 4.013158 7.58486862 Metazoa 33208 Nematoda Nematoda 327 2.41e-85   NTclustered gi|1174020828|gb|KY887583.1| 6293 g33053 i0 100 93.6507936507936 177 0 94 0 13 189 1156 980 Wuchereria bancrofti isolate AP10 small subunit ribosomal RNA gene, partial sequence blastn 17700 327 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Wuchereria Wuchereria bancrofti
29984747 29984747 PRJNA565778_S_NODE_15251_length_282_cov_179.163265_g14955_i0 PRJNA565778 15251 282 179.163265 505.2404073 Diploscapter pachys 2018661 Nematoda Nematoda 120 9.91e-30   NR PAV70299.1 2018661 g14955 i0 98.3 0.617021276595745 58 1 61.7 0 13 186 215 272 PAV70299.1 hypothetical protein WR25_11302 [Diploscapter pachys] diamond 174 120 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
30774752 30774752 PRJNA565778_S_NODE_20074_length_247_cov_4.238095_g19778_i0 PRJNA565778 20074 247 4.238095 10.46809465 Caenorhabditis bovis 2654633 Nematoda Nematoda 104 1.43e-26   NR CAB3407833.1 2654633 g19778 i0 65.8 0.88663967611336 73 25 88.7 0 5 223 73 145 CAB3407833.1 unnamed protein product [Caenorhabditis bovis] diamond 219 104 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;