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contig_metadata

16 rows where bioproject = "PRJNA565778", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

  • Sar · 16 ✖

bioproject 1

  • PRJNA565778 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1135859 1135859 PRJNA565778_S_NODE_41301_length_158_cov_2.991736_g41005_i0 PRJNA565778 41301 158 2.991736 4.72694288 root 1 Root_unresolved Root_unresolved 180 5.74e-41   NTclustered gi|166046530|emb|CU367647.1| 100861 g41005 i0 100 61.7215189873418 97 0 87 0 1 97 615 711 Aphanomyces euteiches cDNA blastn 9752 180 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
4963891 4963891 PRJNA565778_S_NODE_31284_length_196_cov_4.100629_g30988_i0 PRJNA565778 31284 196 4.100629 8.03723284 root 1 Root_unresolved Root_unresolved 254 4.33e-63   NTclustered gi|166044547|emb|CU367456.1| 100861 g30988 i0 99.291 14.1020408163265 141 0 72 1 22 162 169 30 Aphanomyces euteiches cDNA blastn 2764 254 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
5661984 5661984 PRJNA565778_S_NODE_23225_length_229_cov_114.614583_g22929_i0 PRJNA565778 23225 229 114.614583 262.46739507 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 339 1.4e-88   NTclustered gi|328802538|emb|FR832890.1| 890382 g22929 i0 98.438 85.5196506550218 192 3 84 0 1 192 1014 1205 Albugo laibachii Nc14, mitochondrial genomic contig NODE_36_length_2553_cov_1396.121460 blastn 19584 339 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
7513665 7513665 PRJNA565778_S_NODE_31306_length_196_cov_3.144654_g31010_i0 PRJNA565778 31306 196 3.144654 6.16352184 root 1 Root_unresolved Root_unresolved 252 1.56e-62   NTclustered gi|166046607|emb|CU367724.1| 100861 g31010 i0 99.281 9.74489795918367 139 1 71 0 21 159 360 498 Aphanomyces euteiches cDNA blastn 1910 252 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
8211387 8211387 PRJNA565778_S_NODE_34187_length_186_cov_245.879195_g33891_i0 PRJNA565778 34187 186 245.879195 457.3353027 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 254 4.06e-63   NTclustered gi|166046594|emb|CU367711.1| 100861 g33891 i0 97.959 14.7688172043011 147 2 78 1 11 156 485 339 Aphanomyces euteiches cDNA blastn 2747 254 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
10064337 10064337 PRJNA565778_S_NODE_40328_length_163_cov_3.500000_g40032_i0 PRJNA565778 40328 163 3.5 5.705 root 1 Root_unresolved Root_unresolved 265 1.6e-66   NTclustered gi|166044518|emb|CU367427.1| 100861 g40032 i0 99.32 30.4049079754601 147 0 90 1 6 151 346 492 Aphanomyces euteiches cDNA blastn 4956 265 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
10762390 10762390 PRJNA565778_S_NODE_129_length_1424_cov_2.855804_g117_i0 PRJNA565778 129 1424 2.855804 40.66664896 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 274 2.07e-80   NR KAH9092426.1 100861 g117 i0 38.4 3.73946629213483 437 213 90.4 6 1 1287 319 707 KAH9092426.1 hypothetical protein LEN26_018391 [Aphanomyces euteiches] diamond 5325 274 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
11339039 11339039 PRJNA565778_S_NODE_40429_length_163_cov_1.484127_g40133_i0 PRJNA565778 40429 163 1.484127 2.41912701 root 1 Root_unresolved Root_unresolved 257 2.68e-64   NTclustered gi|166044533|emb|CU367442.1| 100861 g40133 i0 100 38.5705521472393 139 0 85 0 3 141 651 513 Aphanomyces euteiches cDNA blastn 6287 257 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
12614801 12614801 PRJNA565778_S_NODE_29690_length_201_cov_306.585366_g29394_i0 PRJNA565778 29690 201 306.585366 616.23658566 root 1 Root_unresolved Root_unresolved 291 3.4e-74   NTclustered gi|166044652|emb|CU367561.1| 100861 g29394 i0 100 77.6019900497512 157 0 78 0 9 165 403 247 Aphanomyces euteiches cDNA blastn 15598 291 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
12614841 12614841 PRJNA565778_S_NODE_38450_length_173_cov_2.992647_g38154_i0 PRJNA565778 38450 173 2.992647 5.17727931 root 1 Root_unresolved Root_unresolved 196 6.339999999999999e-46   NTclustered gi|166046788|emb|CU367363.1| 100861 g38154 i0 99.083 17.7630057803468 109 1 82 0 65 173 539 431 Aphanomyces euteiches cDNA blastn 3073 196 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
16438507 16438507 PRJNA565778_S_NODE_8193_length_375_cov_32.923077_g7900_i0 PRJNA565778 8193 375 32.923077 123.46153875 root 1 Root_unresolved Root_unresolved 599 1.0199999999999998e-166   NTclustered gi|166046508|emb|CU367625.1| 100861 g7900 i0 100 86.3866666666667 324 0 86 0 35 358 436 113 Aphanomyces euteiches cDNA blastn 32395 599 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
17713647 17713647 PRJNA565778_S_NODE_18114_length_260_cov_3.914798_g17818_i0 PRJNA565778 18114 260 3.9147979999999998 10.1784748 root 1 Root_unresolved Root_unresolved 411 3.39e-110   NTclustered gi|166046727|emb|CU367837.1| 100861 g17818 i0 99.558 86.9230769230769 226 0 87 1 34 259 548 772 Aphanomyces euteiches cDNA blastn 22600 411 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22235164 22235164 PRJNA565778_S_NODE_13058_length_304_cov_6.681648_g12762_i0 PRJNA565778 13058 304 6.681648 20.31220992 Peronospora rumicis 162101 SAR_Eukaryotes SAR_Eukaryotes 562 1.06e-155   NTclustered gi|511773433|gb|KC495032.1| 162101 g12762 i0 100 99.8782894736842 304 0 100 0 1 304 4 307 Peronospora rumicis isolate HV312 28S ribosomal RNA gene, partial sequence blastn 30363 562 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora rumicis
22235286 22235286 PRJNA565778_S_NODE_21358_length_239_cov_261.935644_g21062_i0 PRJNA565778 21358 239 261.935644 626.02618916 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 351 1.89e-92   NTclustered gi|166046788|emb|CU367363.1| 100861 g21062 i0 99.482 78.2887029288703 193 1 81 0 12 204 193 385 Aphanomyces euteiches cDNA blastn 18711 351 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
30142320 30142320 PRJNA565778_S_NODE_12472_length_310_cov_302.135531_g12176_i0 PRJNA565778 12472 310 302.135531 936.6201461 Bremia lactucae 4779 SAR_Eukaryotes SAR_Eukaryotes 66.6 5.46e-12   NR XP_067823616.1 4779 g12176 i0 86.7 1.16129032258065 30 4 29 0 39 128 23 52 XP_067823616.1 uncharacterized protein CCR75_002949 [Bremia lactucae] diamond 360 66.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
30647940 30647940 PRJNA565778_S_NODE_31353_length_196_cov_2.125786_g31057_i0 PRJNA565778 31353 196 2.125786 4.16654056 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 48.5 1.8e-4   NR OWZ00785.1 4795 g31057 i0 42.4 1.01020408163265 66 34 96.4 2 195 7 4 68 OWZ00785.1 Calcyphosin [Phytophthora megakarya] diamond 198 48.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;