RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA565778" and tax_clade = "Discoba"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 5 ✖

bioproject 1

  • PRJNA565778 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22235133 22235133 PRJNA565778_S_NODE_11318_length_325_cov_1.732639_g11022_i0 PRJNA565778 11318 325 1.732639 5.63107675 Naegleria 5761 Heterolobosea other_Eukaryota 173 2.79e-49   NR XP_002668999.1 5762 g11022 i0 72.2 5.98153846153846 108 30 99.7 0 325 2 181 288 XP_002668999.1 citrate synthase family member [Naegleria gruberi] diamond 1944 174 0.994252873563218 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
22235332 22235332 PRJNA565778_S_NODE_24618_length_222_cov_148.318919_g24322_i0 PRJNA565778 24618 222 148.318919 329.26800018 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 294 2.96e-75   NTclustered gi|2031941267|emb|OD957862.1| 5763 g24322 i0 96.111 2.43243243243243 180 7 81 0 43 222 173 352 Naegleria fowleri Karachi_NF001 strain blastn 540 294 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
27300818 27300818 PRJNA565778_S_NODE_18363_length_258_cov_67.194570_g18067_i0 PRJNA565778 18363 258 67.19457 173.3619906 Jakoba libera 143017 Root_unresolved Root_unresolved 50.8 1.79e-5   NR YP_007890714.1 143017 g18067 i0 35.9 0.744186046511628 64 41 74.4 0 222 31 78 141 YP_007890714.1 ribosomal protein L16 [Jakoba libera] diamond 192 50.8 1 Eukaryota Discoba       Jakobida Jakobidae Jakoba Jakoba libera
29700066 29700066 PRJNA565778_S_NODE_29610_length_202_cov_2.642424_g29314_i0 PRJNA565778 29610 202 2.642424 5.33769648 Bodo saltans 75058 Euglenozoa other_Eukaryota 42.4 0.0303   NR CUG88213.1 75058 g29314 i0 52.8 0.534653465346535 36 17 53.5 0 202 95 544 579 CUG88213.1 Ca2+-binding protein, putative [Bodo saltans] diamond 108 42.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
31470140 31470140 PRJNA565778_S_NODE_39256_length_169_cov_4.719697_g38960_i0 PRJNA565778 39256 169 4.719697 7.97628793 Acrasis kona 1008807 Heterolobosea other_Eukaryota 53.5 1.57e-6   NR KAL0481178.1 1008807 g38960 i0 78.1 0.568047337278107 32 7 56.8 0 113 18 215 246 KAL0481178.1 DnaJ [Acrasis kona] diamond 96 53.5 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;