RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA565778" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 27 ✖

bioproject 1

  • PRJNA565778 · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
558307 558307 PRJNA565778_S_NODE_28121_length_208_cov_2.391813_g27825_i0 PRJNA565778 28121 208 2.391813 4.97497104 Candidatus Woesebacteria bacterium 2026804 Bacteria Bacteria 67.6 6.51e-7   NTclustered gi|1862742885|gb|CP055307.1| 2026804 g27825 i0 97.436 0.1875 39 1 19 0 10 48 72098 72060 MAG: Candidatus Woesebacteria bacterium isolate Ch104b chromosome, complete genome blastn 39 67.6 1 Bacteria Bacteria candidate phyla   Candidatus Woeseibacteriota         Candidatus Woesebacteria bacterium
3108953 3108953 PRJNA565778_S_NODE_12363_length_312_cov_2.563636_g12067_i0 PRJNA565778 12363 312 2.563636 7.99854432 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 151 2.0299999999999993e-43   NR NLA42598.1 2026720 g12067 i0 78.7 3.61538461538462 94 20 90.4 0 283 2 74 167 NLA42598.1 UMP kinase [Candidatus Saccharibacteria bacterium] diamond 1128 151 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
4385581 4385581 PRJNA565778_S_NODE_13044_length_304_cov_45.052434_g12748_i0 PRJNA565778 13044 304 45.052434 136.95939936 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 431 3.109999999999999e-116   NTclustered gi|2070586293|gb|CP076101.2| 1917697 g12748 i0 95.539 0.884868421052632 269 12 88 0 1 269 629294 629562 MAG: Candidatus Saccharimonas sp. isolate JCVI_32_bin.49 chromosome, complete genome blastn 269 431 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
13312190 13312190 PRJNA565778_S_NODE_21491_length_239_cov_3.064356_g21195_i0 PRJNA565778 21491 239 3.064356 7.32381084 Candidatus Saccharimonas sp. 1917697 Bacteria Bacteria 392 1.11e-104   NTclustered gi|2070586293|gb|CP076101.2| 1917697 g21195 i0 96.234 1 239 9 100 0 1 239 629008 629246 MAG: Candidatus Saccharimonas sp. isolate JCVI_32_bin.49 chromosome, complete genome blastn 239 392 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Saccharimonas Candidatus Saccharimonas sp.
13889740 13889740 PRJNA565778_S_NODE_16731_length_270_cov_294.703863_g16435_i0 PRJNA565778 16731 270 294.703863 795.7004301 Candidatus Nanosynbacter 2093823 Bacteria Bacteria 272 1.74e-68   NTclustered gi|2869833183|gb|CP175706.1| 2093824 g16435 i0 87.395 3.41481481481481 238 28 88 2 1 237 173129 172893 Candidatus Nanosynbacter lyticus strain BB004 chromosome, complete genome blastn 922 272 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter lyticus
18410218 18410218 PRJNA565778_S_NODE_29295_length_203_cov_4.234940_g28999_i0 PRJNA565778 29295 203 4.23494 8.5969282 Bacteria 2 Bacteria Bacteria 76.3 1.47e-15   NR OJU87405.1 1895829 g28999 i0 66.7 2.12807881773399 48 16 70.9 0 159 16 1 48 OJU87405.1 MAG: peroxiredoxin [Candidatus Saccharibacteria bacterium 49-20] diamond 432 76.3 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 49-20
22235390 22235390 PRJNA565778_S_NODE_29718_length_201_cov_192.573171_g29422_i0 PRJNA565778 29718 201 192.573171 387.07207371 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17 1619070 Bacteria Bacteria 272 1.2299999999999998e-68   NTclustered gi|837350690|gb|CP011211.1| 1619070 g29422 i0 96.364 0.82089552238806 165 6 82 0 1 165 752272 752436 Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17, complete genome blastn 165 272 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium GW2011_GWC2_44_17
26858359 26858359 PRJNA565778_S_NODE_27101_length_212_cov_3.091429_g26805_i0 PRJNA565778 27101 212 3.091429 6.55382948 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 89.7 4.51e-19   NR HEV7951839.1 2973664 g26805 i0 77.6 1.64150943396226 58 13 82.1 0 178 5 342 399 HEV7951839.1 ABC transporter permease [Candidatus Saccharimonadales bacterium] diamond 348 89.7 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
27110939 27110939 PRJNA565778_S_NODE_19142_length_253_cov_16.842593_g18846_i0 PRJNA565778 19142 253 16.842593 42.61176029 Parcubacteria group bacterium GW2 2026774 Bacteria Bacteria 132 3.2499999999999996e-37   NR KKS44413.1 1618821 g18846 i0 86.8 0.901185770750988 76 10 90.1 0 20 247 102 177 KKS44413.1 MAG: 50S ribosomal protein L6 [Parcubacteria group bacterium GW2011_GWA2_42_18] diamond 228 132 1 Bacteria Bacteria candidate phyla             Parcubacteria group bacterium GW2011_GWA2_42_18
27504097 27504097 PRJNA565778_S_NODE_31623_length_195_cov_2.468354_g31327_i0 PRJNA565778 31623 195 2.468354 4.8132903 Bacteria 2 Bacteria Bacteria 53.5 2.99e-7   NR KKR33554.1 1618642 g31327 i0 47.1 7.23076923076923 51 27 78.5 0 32 184 35 85 KKR33554.1 MAG: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [Candidatus Falkowbacteria bacterium GW2011_GWF2_39_8] diamond 1410 53.5 1 Bacteria Bacteria candidate phyla   Candidatus Falkowiibacteriota         Candidatus Falkowbacteria bacterium GW2011_GWF2_39_8
28058571 28058571 PRJNA565778_S_NODE_7885_length_382_cov_3.504348_g7594_i0 PRJNA565778 7885 382 3.504348 13.38660936 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 87.4 1.7e-17   NR MDP5039117.1 2044595 g7594 i0 95.2 0.659685863874346 42 2 33 0 126 1 122 163 MDP5039117.1 ribonucleotide-diphosphate reductase subunit beta [Candidatus Altimarinota bacterium] diamond 252 87.4 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
28279420 28279420 PRJNA565778_S_NODE_10826_length_331_cov_43.272109_g10530_i0 PRJNA565778 10826 331 43.272109 143.23068079 Minisyncoccota bacterium 2053589 Bacteria Bacteria 103 1.25e-25   NR MEX0690151.1 2053589 g10530 i0 59.2 1.37764350453172 76 31 68.9 0 228 1 40 115 MEX0690151.1 5-formyltetrahydrofolate cyclo-ligase [Candidatus Paceibacterota bacterium] diamond 456 103 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29321494 29321494 PRJNA565778_S_NODE_29709_length_201_cov_217.213415_g29413_i0 PRJNA565778 29709 201 217.213415 436.59896415 candidate division WOR-3 bacterium 2052148 Bacteria Bacteria 64.3 1.03e-11   NR MEO0271692.1 2052148 g29413 i0 81.6 0.567164179104478 38 7 56.7 0 86 199 32 69 MEO0271692.1 hypothetical protein [candidate division WOR-3 bacterium] diamond 114 64.3 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium
29353273 29353273 PRJNA565778_S_NODE_22569_length_233_cov_4.142857_g22273_i0 PRJNA565778 22569 233 4.142857 9.65285681 Candidatus Elulimicrobium humile 2802965 Bacteria Bacteria 85.5 5.83e-18   NR NBP56374.1 2802965 g22273 i0 62.7 0.862660944206009 67 24 86.3 1 31 231 73 138 NBP56374.1 hypothetical protein [Candidatus Elulimicrobium humile] diamond 201 85.5 1 Bacteria Bacteria candidate phyla   Candidatus Elulimicrobiota Candidatus Elulimicrobia Candidatus Elulimicrobiales Candidatus Elulimicrobiaceae Candidatus Elulimicrobium Candidatus Elulimicrobium humile
29840363 29840363 PRJNA565778_S_NODE_13831_length_296_cov_2.559846_g13535_i0 PRJNA565778 13831 296 2.559846 7.57714416 Bacteria 2 Bacteria Bacteria 153 7.94e-45   NR MDB5225244.1 1932010 g13535 i0 75.5 3.96283783783784 98 23 99.3 1 2 295 74 170 MDB5225244.1 hypothetical protein [Candidatus Adlerbacteria bacterium] diamond 1173 153 1 Bacteria Bacteria candidate phyla   Candidatus Adleribacteriota         Candidatus Adlerbacteria bacterium
29953122 29953122 PRJNA565778_S_NODE_21871_length_237_cov_2.410000_g21575_i0 PRJNA565778 21871 237 2.41 5.7117000000000004 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 40 0.0416   NR HEX5815179.1 2072417 g21575 i0 41.9 0.544303797468354 43 25 54.4 0 150 22 13 55 HEX5815179.1 hypothetical protein [Candidatus Methylomirabilota bacterium] diamond 129 40 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
30742973 30742973 PRJNA565778_S_NODE_20054_length_247_cov_5.595238_g19758_i0 PRJNA565778 20054 247 5.595238 13.82023786 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 50.4 7.09e-5   NR MFA5623347.1 2099670 g19758 i0 38.2 1.51821862348178 68 42 82.6 0 39 242 4 71 MFA5623347.1 hypothetical protein [Candidatus Dojkabacteria bacterium] diamond 375 50.4 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium
31452118 31452118 PRJNA565778_S_NODE_42676_length_152_cov_1.695652_g42380_i0 PRJNA565778 42676 152 1.695652 2.57739104 Bacteria 2 Bacteria Bacteria 60.5 2.18e-9   NR MBP9732622.1 2026717 g42380 i0 68.6 3.43421052631579 35 11 69.1 0 150 46 166 200 MBP9732622.1 hypothetical protein [Candidatus Magasanikiibacteriota bacterium] diamond 522 60.8 0.995065789473684 Bacteria Bacteria candidate phyla   Candidatus Magasanikiibacteriota         Candidatus Magasanikiibacteriota bacterium
31501797 31501797 PRJNA565778_S_NODE_5816_length_434_cov_97.123426_g5560_i0 PRJNA565778 5816 434 97.123426 421.51566884 Minisyncoccota bacterium 2053589 Bacteria Bacteria 45.8 0.00812   NR MDD2909782.1 2053589 g5560 i0 43.7 0.490783410138249 71 33 49.1 1 395 183 87 150 MDD2909782.1 Hsp70 family protein [Candidatus Paceibacterota bacterium] diamond 213 45.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
31659587 31659587 PRJNA565778_S_NODE_23337_length_229_cov_2.760417_g23041_i0 PRJNA565778 23337 229 2.760417 6.32135493 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 63.5 1.41e-9   NR MBI2116345.1 2072417 g23041 i0 37.1 1.67685589519651 70 44 91.7 0 219 10 290 359 MBI2116345.1 hypothetical protein [Candidatus Methylomirabilota bacterium] diamond 384 63.5 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
31912806 31912806 PRJNA565778_S_NODE_28037_length_208_cov_11.444444_g27741_i0 PRJNA565778 28037 208 11.444444 23.80444352 Patescibacteria group bacterium 2052139 Bacteria Bacteria 119 1.14e-30   NR MEZ7821337.1 2052139 g27741 i0 100 0.822115384615385 57 0 82.2 0 173 3 247 303 MEZ7821337.1 Eco57I restriction-modification methylase domain-containing protein [Patescibacteria group bacterium] diamond 171 119 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31944276 31944276 PRJNA565778_S_NODE_5297_length_452_cov_83.800000_g5047_i0 PRJNA565778 5297 452 83.8 378.776 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 74.3 1.57e-14   NR MCK9416614.1 2099670 g5047 i0 72.1 0.285398230088496 43 12 28.5 0 408 280 21 63 MCK9416614.1 hypothetical protein [Candidatus Dojkabacteria bacterium] diamond 129 74.3 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium
32134387 32134387 PRJNA565778_S_NODE_10938_length_330_cov_3.774744_g10642_i0 PRJNA565778 10938 330 3.774744 12.4566552 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 73.2 3.96e-13   NR HOV34868.1 2099670 g10642 i0 45.7 0.954545454545455 105 57 95.5 0 321 7 67 171 HOV34868.1 hypothetical protein [Candidatus Dojkabacteria bacterium] diamond 315 73.2 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium
32211258 32211258 PRJNA565778_S_NODE_5418_length_448_cov_3.165450_g5167_i0 PRJNA565778 5418 448 3.16545 14.181216 Bacteria 2 Bacteria Bacteria 128 3.95e-34   NR KKP91358.1 1618765 g5167 i0 48.9 3.53571428571429 133 66 88.4 2 444 49 70 201 KKP91358.1 MAG: Abortive infection protein [Candidatus Nomurabacteria bacterium GW2011_GWE2_36_115] diamond 1584 129 0.992248062015504 Bacteria Bacteria candidate phyla   Candidatus Nomuraibacteriota         Candidatus Nomurabacteria bacterium GW2011_GWE2_36_115
32608718 32608718 PRJNA565778_S_NODE_7240_length_396_cov_150.376045_g6956_i0 PRJNA565778 7240 396 150.376045 595.4891382 Patescibacteria group bacterium 2052139 Bacteria Bacteria 122 2.81e-29   NR MFA5131427.1 2052139 g6956 i0 91.2 0.515151515151515 68 6 51.5 0 38 241 2730 2797 MFA5131427.1 hypothetical protein [Patescibacteria group bacterium] diamond 204 122 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
32734821 32734821 PRJNA565778_S_NODE_14860_length_286_cov_4.911647_g14564_i0 PRJNA565778 14860 286 4.911647 14.04731042 Candidatus Methylomirabilota bacterium 2072417 Bacteria Bacteria 164 2.0399999999999998e-47   NR HXG19573.1 2072417 g14564 i0 82.8 1.95104895104895 93 16 97.6 0 1 279 232 324 HXG19573.1 LLM class flavin-dependent oxidoreductase [Candidatus Methylomirabilota bacterium] diamond 558 164 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         Candidatus Methylomirabilota bacterium
32829205 32829205 PRJNA565778_S_NODE_34220_length_186_cov_148.483221_g33924_i0 PRJNA565778 34220 186 148.483221 276.17879106 Candidatus Dojkabacteria bacterium 2099670 Bacteria Bacteria 42.7 0.017   NR MCK9369639.1 2099670 g33924 i0 42.6 0.758064516129032 47 27 75.8 0 146 6 12 58 MCK9369639.1 MucR family transcriptional regulator [Candidatus Dojkabacteria bacterium] diamond 141 42.7 1 Bacteria Bacteria candidate phyla             Candidatus Dojkabacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;